miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAAGGGGCATGCAGAGGAG

selected species: Brachypodium distachyon



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGGAAGGGGCATGCAGAGGAG CCTGTGCCTGCCTCTTCCATT up 2 0


Secondary structure

TGGGGGCTGGAGCAGCAGCGGTGGAAGGGGCATGCAGAGGAGCAGGGATGATGGGGGGTTGTACTCTGCTTCTTCCCCTCTCGTTCTCCTGTGCCTGCCTCTTCCATTCCTGCTGCTACCGCCGTG
----------------AGCGGTGGAAGGGGCATGCAGA 	1
---------------------TGGAAGGGGCATGCAGAGGAGC 	5
---------------------TGGAAGGGGCATGCAGAGGAG 	211
---------------------TGGAAGGGGCATGCAGAGGA 	4
----------------------GGAAGGGGCATGCAGAGGAG 	1
-----------------------GAAGGGGCATGCAGAGGAG 	1
------------------------------------------CAGGGATGATGGGGGGTTGTAC 	1
-----------------------------------------------------GGGGGTTGTACTCTGCTTCTTC 	1
------------------------------------------------------------------------------TCTCGTTCTCCTGTGCCTGCC 	1
---------------------------------------------------------------------------------------CCTGTGCCTGCCTCTTCCATT 	9
-----------------------------------------------------------------------------------------TGTGCCTGCCTCTTCCATTCC 	1
-------------------------------------------------------------------------------------------TGCCTGCCTCTTCCATTCCTGC 	2
----------------------------------------------------------------------------------------------CTGCCTCTTCCATTCCTGCTGC 	4
-----------------------------------------------------------------------------------------------TGCCTCTTCCATTCCTGCTGC 	4


Overlaps with: MNEST041806
Overlaps with miRBase pre-miRNAs: bdi-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506621-23192 TGGAAGGGGCATGCAGAGGAG CCTGTGCCTGCCTCTTCCATT up 2 0


Secondary structure

TGGGGGCTGGAGCAGCAGCGGTGGAAGGGGCATGCAGAGGAGCAGGGATGATGGGGGGTTGTACTCTGCTTCTTCCCCTCTCGTTCTCCTGTGCCTGCCTCTTCCATTCCTGCTGCTACCGCCGTG
---------------------TGGAAGGGGCATGCAGAGGAG 	222
---------------------TGGAAGGGGCATGCAGAGGA 	1
----------------------GGAAGGGGCATGCAGAGGAG 	2


Overlaps with: MNEST041806
Overlaps with miRBase pre-miRNAs: bdi-MIR528
HuntMi prediction: true miRNA