miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAAGGGGCATGCAGAGGAG

selected species: Oryza sativa



13 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
---------------------TGGAAGGGGCATGCAGAGGAG 	226
---------------------TGGAAGGGGCATGCAGAGG 	2
----------------------GGAAGGGGCATGCAGAGGAG 	1


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM571078-22531 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
---------------------TGGAAGGGGCATGCAGAGGAGC 	15
---------------------TGGAAGGGGCATGCAGAGGAG 	2047
---------------------TGGAAGGGGCATGCAGAGGA 	6
---------------------TGGAAGGGGCATGCAGAGG 	5
----------------------GGAAGGGGCATGCAGAGGAG 	94
----------------------GGAAGGGGCATGCAGAGGAGC 	2
----------------------GGAAGGGGCATGCAGAGGA 	1
-----------------------GAAGGGGCATGCAGAGGAG 	7


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520638-18676 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
-----------------GCAGTGGAAGGGGCATGCAGA 	1
-------------------AGTGGAAGGGGCATGCAGAGG 	1
--------------------GTGGAAGGGGCATGCAGAGGA 	1
---------------------TGGAAGGGGCATGCAGAGGAGC 	41
---------------------TGGAAGGGGCATGCAGAGG 	77
---------------------TGGAAGGGGCATGCAGAGGAG 	7511
---------------------TGGAAGGGGCATGCAGAGGA 	129
----------------------GGAAGGGGCATGCAGAGGAG 	18
----------------------GGAAGGGGCATGCAGAGGAGC 	2
----------------------GGAAGGGGCATGCAGAGGA 	2
-----------------------GAAGGGGCATGCAGAGGAG 	4
-------------------------AGGGGCATGCAGAGGAGCAGGA 	1
-------------------------------------------------------------------------------TCTCTCTCCTGTGCTTGCCTC 	1
----------------------------------------------------------------------------------CTCTCCTGTGCTTGCCTCTTC 	1
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCAT 	1
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCATT 	16
---------------------------------------------------------------------------------------CTGTGCTTGCCTCTTCCATT 	2


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM686040-31373 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
-------------AGCAGCAGTGGAAGGGGCATG 	1
-------------------AGTGGAAGGGGCATGCAGAGG 	1
---------------------TGGAAGGGGCATGCAGAGGAGCAGG 	3
---------------------TGGAAGGGGCATGCAGAGGAGCAG 	3
---------------------TGGAAGGGGCATGCAGAGGAGCA 	2
---------------------TGGAAGGGGCATGCAGAGGAGC 	134
---------------------TGGAAGGGGCATGCAGAGGAG 	23735
---------------------TGGAAGGGGCATGCAGAGGA 	64
---------------------TGGAAGGGGCATGCAGAGG 	39
----------------------GGAAGGGGCATGCAGAGGAGCAGGA 	2
----------------------GGAAGGGGCATGCAGAGGAGCAGG 	8
----------------------GGAAGGGGCATGCAGAGGAGCAG 	2
----------------------GGAAGGGGCATGCAGAGGAGCA 	1
----------------------GGAAGGGGCATGCAGAGGAGC 	28
----------------------GGAAGGGGCATGCAGAGGAG 	374
----------------------GGAAGGGGCATGCAGAGGA 	2
-----------------------GAAGGGGCATGCAGAGGAGC 	1
-----------------------GAAGGGGCATGCAGAGGAG 	39
--------------------------GGGGCATGCAGAGGAGCAGGA 	2
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCATT 	4


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520640-18679 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
----------------AGCAGTGGAAGGGGCATGCAGA 	2
----------------AGCAGTGGAAGGGGCATGCAGAGG 	1
-----------------GCAGTGGAAGGGGCATGCAGA 	1
------------------CAGTGGAAGGGGCATGCAGAGG 	1
---------------------TGGAAGGGGCATGCAGAGGAGC 	29
---------------------TGGAAGGGGCATGCAGAGG 	32
---------------------TGGAAGGGGCATGCAGAGGAG 	4846
---------------------TGGAAGGGGCATGCAGAGGAGCAGGA 	1
---------------------TGGAAGGGGCATGCAGAGGA 	100
----------------------GGAAGGGGCATGCAGAGGAG 	12
-----------------------GAAGGGGCATGCAGAGGAG 	3
------------------------AAGGGGCATGCAGAGGAGCAGGAG 	1
------------------------AAGGGGCATGCAGAGGAGCAGGA 	2
-------------------------AGGGGCATGCAGAGGAGCAGG 	1
--------------------------GGGGCATGCAGAGGAGCAGGA 	3
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCATT 	13
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCA 	1
---------------------------------------------------------------------------------------CTGTGCTTGCCTCTTCCATT 	1


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM571077-22529 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
---------------------TGGAAGGGGCATGCAGAGGAG 	2794
---------------------TGGAAGGGGCATGCAGAGGAGC 	11
---------------------TGGAAGGGGCATGCAGAGGA 	12
---------------------TGGAAGGGGCATGCAGAGG 	6
---------------------TGGAAGGGGCATGCAGAGGAGCA 	1
---------------------TGGAAGGGGCATGCAGAGGAGCAG 	1
----------------------GGAAGGGGCATGCAGAGGAG 	123
----------------------GGAAGGGGCATGCAGAGGAGC 	2
----------------------GGAAGGGGCATGCAGAGGA 	1
-----------------------GAAGGGGCATGCAGAGGAG 	2


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM686039-31370 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
----------------AGCAGTGGAAGGGGCATGCAGAGG 	1
----------------AGCAGTGGAAGGGGCATGCAGA 	1
----------------AGCAGTGGAAGGGGCATGCAG 	5
-----------------GCAGTGGAAGGGGCATGCAGA 	1
-------------------AGTGGAAGGGGCATGCAGAGGA 	2
-------------------AGTGGAAGGGGCATGCAGAG 	1
--------------------GTGGAAGGGGCATGCAGAGGAG 	2
--------------------GTGGAAGGGGCATGCAGAGGA 	3
--------------------GTGGAAGGGGCATGCAGAG 	1
---------------------TGGAAGGGGCATGCAGAGGAGCAGG 	6
---------------------TGGAAGGGGCATGCAGAGGAGCAG 	16
---------------------TGGAAGGGGCATGCAGAGGAGCA 	12
---------------------TGGAAGGGGCATGCAGAGGAGC 	816
---------------------TGGAAGGGGCATGCAGAGGAG 	111854
---------------------TGGAAGGGGCATGCAGAGGA 	301
---------------------TGGAAGGGGCATGCAGAGG 	111
----------------------GGAAGGGGCATGCAGAGGAGCAGGA 	3
----------------------GGAAGGGGCATGCAGAGGAGCAGG 	10
----------------------GGAAGGGGCATGCAGAGGAGCAG 	4
----------------------GGAAGGGGCATGCAGAGGAGCA 	1
----------------------GGAAGGGGCATGCAGAGGAGC 	117
----------------------GGAAGGGGCATGCAGAGGAG 	2035
----------------------GGAAGGGGCATGCAGAGGA 	12
-----------------------GAAGGGGCATGCAGAGGAGC 	5
-----------------------GAAGGGGCATGCAGAGGAG 	177
------------------------AAGGGGCATGCAGAGGAGCAGGAG 	1
-------------------------AGGGGCATGCAGAGGAGCAGG 	3
-------------------------AGGGGCATGCAGAGGAGCAG 	2
-------------------------AGGGGCATGCAGAGGAGCA 	2
--------------------------GGGGCATGCAGAGGAGCAGGA 	4
-----------------------------------------------------------------------------CCTCTCTCTCCTGTGCTTGCC 	1
-------------------------------------------------------------------------------------TCCTGTGCTTGCCTCTTCCATT 	2
-------------------------------------------------------------------------------------TCCTGTGCTTGCCTCTTCCAT 	1
-------------------------------------------------------------------------------------TCCTGTGCTTGCCTCTTCCA 	1
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCATT 	69
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCAT 	2
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCA 	1


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520634-18667 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
---------------------TGGAAGGGGCATGCAGAGGA 	1
---------------------TGGAAGGGGCATGCAGAGGAG 	14


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520636-18672 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
----------------AGCAGTGGAAGGGGCATGCAGAGG 	1
---------------------TGGAAGGGGCATGCAGAGGAGC 	3
---------------------TGGAAGGGGCATGCAGAGG 	1
---------------------TGGAAGGGGCATGCAGAGGAG 	317
---------------------TGGAAGGGGCATGCAGAGGA 	4


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM520635-18669 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
-----------------GCAGTGGAAGGGGCATGCAGAGGA 	1
---------------------TGGAAGGGGCATGCAGAGGA 	1
---------------------TGGAAGGGGCATGCAGAGGAGC 	1
---------------------TGGAAGGGGCATGCAGAGGAGCAGG 	1
---------------------TGGAAGGGGCATGCAGAGGAG 	91
----------------------GGAAGGGGCATGCAGAGGAGCAGGA 	4
----------------------GGAAGGGGCATGCAGAGGAGCAGG 	2
-----------------------GAAGGGGCATGCAGAGGAGCAGGAG 	3
------------------------AAGGGGCATGCAGAGGAGCAGGAG 	1
----------------------------GGCATGCAGAGGAGCAGGA 	1
-----------------------------------------------------------------------------------TCTCCTGTGCTTGCCTCTTCCATT 	4


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM520637-18674 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
-----------------GCAGTGGAAGGGGCATGCAGA 	1
---------------------TGGAAGGGGCATGCAGAGGAGC 	12
---------------------TGGAAGGGGCATGCAGAGG 	31
---------------------TGGAAGGGGCATGCAGAGGAG 	1381
---------------------TGGAAGGGGCATGCAGAGGA 	49
----------------------GGAAGGGGCATGCAGAGGAG 	8
-----------------------GAAGGGGCATGCAGAGGAG 	1
-------------------------AGGGGCATGCAGAGGAGCAGGA 	1
-------------------------AGGGGCATGCAGAGGAGCAGGAGA 	1
--------------------------GGGGCATGCAGAGGAGCAGGA 	1
---------------------------------------------------CAGTTTGAAGCTGGACTTCACTTT 	2
-----------------------------------------------------------------------------------TCTCCTGTGCTTGCCTCTTCCAT 	1
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCATT 	2


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Oryza sativa GSM693279 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
---------------------TGGAAGGGGCATGCAGAGGAG 	2346
---------------------TGGAAGGGGCATGCAGAGGAGC 	13
---------------------TGGAAGGGGCATGCAGAGG 	9
---------------------TGGAAGGGGCATGCAGAGGA 	6
----------------------GGAAGGGGCATGCAGAGGAG 	33
-----------------------GAAGGGGCATGCAGAGGAG 	4


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Oryza sativa GSM520639-18678 TGGAAGGGGCATGCAGAGGAG CCTGTGCTTGCCTCTTCCATT up 2 0


Secondary structure

TTTTGGCTGTAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCAGGAGATTCAGTTTGAAGCTGGACTTCACTTTTGCCTCTCTCTCCTGTGCTTGCCTCTTCCATTCCTGCTGCTAGGCTGTTC
----------------AGCAGTGGAAGGGGCATGCAGAGG 	2
-----------------GCAGTGGAAGGGGCATGCAGA 	3
---------------------TGGAAGGGGCATGCAGAGGAGC 	37
---------------------TGGAAGGGGCATGCAGAGG 	31
---------------------TGGAAGGGGCATGCAGAGGAG 	8840
---------------------TGGAAGGGGCATGCAGAGGA 	99
----------------------GGAAGGGGCATGCAGAGGAG 	24
----------------------GGAAGGGGCATGCAGAGGAGCAGGA 	3
-----------------------GAAGGGGCATGCAGAGGAG 	9
------------------------AAGGGGCATGCAGAGGAGCAGGAG 	4
---------------------------------------------------------------------------------TCTCTCCTGTGCTTGCCTCTT 	1
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCATT 	14
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCAT 	3
--------------------------------------------------------------------------------------CCTGTGCTTGCCTCTTCCA 	1


Overlaps with: MNEST042102 MNEST049018
Overlaps with miRBase pre-miRNAs: osa-MIR528
HuntMi prediction: true miRNA