miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAATGTAAAGAAGTATGGAG

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TGGAATGTAAAGAAGTATGGAG CCGTACTTCTTGTATGTTCGCATA down 0 2


Secondary structure

CATCGCGACGTGGAACACCCGGCACCAGAGTTCCGTACTTCTTGTATGTTCGCATAGTGTGCGCGAGCCATTTGGCCGAATTTTACGACGTATGGAATGTAAAGAAGTATGGAGCGGCGGGCCGGGCGACACATCACAGGCAC
--------------------------------CCGTACTTCTTGTATGTTCGCATA 	10
--------------------------------CCGTACTTCTTGTATGTTCGCAT 	1
------------------------------------------------------------------------------------------TATGGAATGTAAAGAAGTATGGAG 	1
-------------------------------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	53
-------------------------------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	2
-------------------------------------------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	5
--------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	293
--------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	281630
--------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	17630
--------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	2638
--------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	75
--------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGCGG 	3
--------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGCG 	8
---------------------------------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	103
---------------------------------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	4
----------------------------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	50
----------------------------------------------------------------------------------------------GAATGTAAAGAAGTATGGA 	5
-----------------------------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	3

Overlaps with: MNEST035042
Overlaps with miRBase pre-miRNAs: api-mir-1
HuntMi prediction: true miRNA