miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAATGTAAAGAAGTATGGAG

selected species: Drosophila melanogaster



25 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM360257-14325 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTC 	1
-------------------------------TCCATGCTTCCTTGCATTCA 	1
-------------------------------TCCATGCTTCCTTGCATTCAAT 	1
--------------------------------CCATGCTTCCTTGCATTCAATA 	16
--------------------------------CCATGCTTCCTTGCATTCAA 	1
--------------------------------CCATGCTTCCTTGCATTCA 	3
--------------------------------CCATGCTTCCTTGCATTCAAT 	3
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	6
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	1557
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	41
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	6


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399107-16288 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTC 	2
-------------------------------TCCATGCTTCCTTGCATTCAA 	24
-------------------------------TCCATGCTTCCTTGCATTCA 	36
-------------------------------TCCATGCTTCCTTGCATTCAAT 	40
--------------------------------CCATGCTTCCTTGCATTCAATA 	436
--------------------------------CCATGCTTCCTTGCATTCAA 	162
--------------------------------CCATGCTTCCTTGCATTCA 	278
--------------------------------CCATGCTTCCTTGCATTCAAT 	109
---------------------------------CATGCTTCCTTGCATTCAAT 	5
---------------------------------CATGCTTCCTTGCATTCAA 	6
---------------------------------CATGCTTCCTTGCATTCAATA 	10
----------------------------------ATGCTTCCTTGCATTCAATA 	1
--------------------------------------------------------------------TATGGAATGTAAAGAAGTATGG 	2
--------------------------------------------------------------------TATGGAATGTAAAGAAGTATGGA 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAGC 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	393
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	6
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	36
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	73034
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	21
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGCG 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	61
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	524
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	8667
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	118
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAGC 	1
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGG 	1
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	8
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAGC 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	17
-------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	4


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399106-16287 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	3
-------------------------------TCCATGCTTCCTTGCATTCAAT 	12
-------------------------------TCCATGCTTCCTTGCATTC 	1
-------------------------------TCCATGCTTCCTTGCATTCA 	3
--------------------------------CCATGCTTCCTTGCATTCAA 	54
--------------------------------CCATGCTTCCTTGCATTCAATA 	115
--------------------------------CCATGCTTCCTTGCATTCA 	55
--------------------------------CCATGCTTCCTTGCATTCAAT 	62
---------------------------------CATGCTTCCTTGCATTCAATA 	7
--------------------------------------------------------------------TATGGAATGTAAAGAAGTATGGA 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	3
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	137
---------------------------------------------------------------------ATGGAATGTAAAGAAGTAT 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	13
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	26210
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	22
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	308
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	26
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	3171
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	44
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	5
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	8
------------------------------------------------------------------------GAATGTAAAGAAGTATGGA 	1


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466487_wt_total TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAAT 	3
-------------------------------TCCATGCTTCCTTGCATTCAA 	2
--------------------------------CCATGCTTCCTTGCATTCAA 	3
--------------------------------CCATGCTTCCTTGCATTCA 	4
--------------------------------CCATGCTTCCTTGCATTCAATA 	83
--------------------------------CCATGCTTCCTTGCATTCAAT 	13
---------------------------------CATGCTTCCTTGCATTCAATA 	9
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	5
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	49256
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	14
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	52
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	33
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	3841
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	529
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	35
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGG 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGA 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	59
-------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	13


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM399105-16286 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	567
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	2
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	37
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	2


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM360262-14327 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	3
-------------------------------TCCATGCTTCCTTGCATTCA 	5
-------------------------------TCCATGCTTCCTTGCATTCAAT 	4
--------------------------------CCATGCTTCCTTGCATTCAATA 	91
--------------------------------CCATGCTTCCTTGCATTCAA 	9
--------------------------------CCATGCTTCCTTGCATTCA 	29
--------------------------------CCATGCTTCCTTGCATTCAAT 	12
---------------------------------CATGCTTCCTTGCATTCAAT 	1
---------------------------------CATGCTTCCTTGCATTCAATA 	2
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	257
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	30
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	40087
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	18
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	20
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	130
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	3347
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	63
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	8
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	14
-------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	1


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM385822-16273 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
--------------------------------CCATGCTTCCTTGCATTCAA 	2
--------------------------------CCATGCTTCCTTGCATTCA 	1
--------------------------------CCATGCTTCCTTGCATTCAATA 	1
--------------------------------CCATGCTTCCTTGCATTCAAT 	3
---------------------------------CATGCTTCCTTGCATTCAAT 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	238
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	2
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	7
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	39
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	1
-------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	1


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM360256-14324 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	1
-------------------------------TCCATGCTTCCTTGCATTCAAT 	1
--------------------------------CCATGCTTCCTTGCATTCAATA 	36
--------------------------------CCATGCTTCCTTGCATTCAA 	3
--------------------------------CCATGCTTCCTTGCATTCA 	2
--------------------------------CCATGCTTCCTTGCATTCAAT 	8
---------------------------------CATGCTTCCTTGCATTCAAT 	1
---------------------------------CATGCTTCCTTGCATTCAATA 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	10
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	1903
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	3
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	4
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	88
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	6
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAGC 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	2
-------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	3


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	2
--------------------------------CCATGCTTCCTTGCATTCAA 	4
--------------------------------CCATGCTTCCTTGCATTCAATA 	39
--------------------------------CCATGCTTCCTTGCATTCAAT 	5
---------------------------------CATGCTTCCTTGCATTCAATA 	5
----------------------------------ATGCTTCCTTGCATTCAATA 	1
--------------------------------------------------------------------TATGGAATGTAAAGAAGTATGGAG 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	5
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	35399
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	4
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	19
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	16
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	4979
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	557
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	1
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGG 	1
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAGC 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	19


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAAT 	5
-------------------------------TCCATGCTTCCTTGCATTCAA 	1
--------------------------------CCATGCTTCCTTGCATTCAA 	16
--------------------------------CCATGCTTCCTTGCATTCA 	5
--------------------------------CCATGCTTCCTTGCATTCAATA 	61
--------------------------------CCATGCTTCCTTGCATTCAAT 	13
--------------------------------------------------------------------TATGGAATGTAAAGAAGTATGGAG 	3
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	61522
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	83
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	59
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	45
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	6565
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	1006
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	123
------------------------------------------------------------------------GAATGTAAAGAAGTATGGA 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	4
-------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	7


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM385821-16268 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	818
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	1


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM286605-9793 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
--------------------------------CCATGCTTCCTTGCATTCAA 	13
--------------------------------CCATGCTTCCTTGCATTCAATA 	263
--------------------------------CCATGCTTCCTTGCATTCA 	9
--------------------------------CCATGCTTCCTTGCATTCAAT 	80
---------------------------------CATGCTTCCTTGCATTCAAT 	13
---------------------------------CATGCTTCCTTGCATTCAATA 	22
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	52
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	3
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	8922
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	3
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	42
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	3
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	328
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	11
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	1


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM343833-15151 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	6


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM343832-15149 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	13


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM399100-5263 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	33
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	1


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Drosophila melanogaster GSM360260-14326 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	7
-------------------------------TCCATGCTTCCTTGCATTCA 	1
-------------------------------TCCATGCTTCCTTGCATTCAAT 	2
--------------------------------CCATGCTTCCTTGCATTCAATA 	88
--------------------------------CCATGCTTCCTTGCATTCAA 	6
--------------------------------CCATGCTTCCTTGCATTCA 	9
--------------------------------CCATGCTTCCTTGCATTCAATAGTT 	1
--------------------------------CCATGCTTCCTTGCATTCAAT 	18
---------------------------------CATGCTTCCTTGCATTCAAT 	1
---------------------------------CATGCTTCCTTGCATTCAATA 	9
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	149
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	14
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	26288
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	9
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	14
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	2284
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	111
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	40
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	2
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	4
------------------------------------------------------------------------GAATGTAAAGAAGTATGGA 	1
-------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	1


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Drosophila melanogaster GSM322543-14323 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	2
-------------------------------TCCATGCTTCCTTGCATTCA 	7
-------------------------------TCCATGCTTCCTTGCATTCAAT 	10
--------------------------------CCATGCTTCCTTGCATTCAAT 	61
--------------------------------CCATGCTTCCTTGCATTCAATA 	142
--------------------------------CCATGCTTCCTTGCATTCAA 	86
--------------------------------CCATGCTTCCTTGCATTCA 	141
---------------------------------CATGCTTCCTTGCATTCAATA 	14
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAGC 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	301
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	2
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	22
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	15
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	33
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	34831
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	170
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	2482
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	83
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	7


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Drosophila melanogaster GSM286607-9796 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAAT 	11
--------------------------------CCATGCTTCCTTGCATTCAATA 	427
--------------------------------CCATGCTTCCTTGCATTCAA 	25
--------------------------------CCATGCTTCCTTGCATTCA 	2
--------------------------------CCATGCTTCCTTGCATTCAAT 	161
---------------------------------CATGCTTCCTTGCATTCAAT 	6
---------------------------------CATGCTTCCTTGCATTCAATA 	32
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	182
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	5
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	28107
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	18
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	45
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	45
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	223
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	90
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	10
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	14


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Drosophila melanogaster GSM399101-5265 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	9


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Drosophila melanogaster GSM286604-9792 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	3
-------------------------------TCCATGCTTCCTTGCATTCA 	10
-------------------------------TCCATGCTTCCTTGCATTCAAT 	5
--------------------------------CCATGCTTCCTTGCATTCAATA 	165
--------------------------------CCATGCTTCCTTGCATTCAA 	24
--------------------------------CCATGCTTCCTTGCATTCA 	79
--------------------------------CCATGCTTCCTTGCATTCAAT 	36
---------------------------------CATGCTTCCTTGCATTCAATA 	8
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	115
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	3
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	31
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	29028
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	18
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	33
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	288
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	4260
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	24
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	1
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	9


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Drosophila melanogaster GSM385744-16261 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
--------------------------------CCATGCTTCCTTGCATTCAA 	2
--------------------------------CCATGCTTCCTTGCATTCAAT 	4
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	301
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	3
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	63


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Drosophila melanogaster GSM322208-14317 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	2
-------------------------------TCCATGCTTCCTTGCATTCAAT 	1
-------------------------------TCCATGCTTCCTTGCATTC 	1
-------------------------------TCCATGCTTCCTTGCATTCA 	1
--------------------------------CCATGCTTCCTTGCATTCAA 	4
--------------------------------CCATGCTTCCTTGCATTCAATA 	12
--------------------------------CCATGCTTCCTTGCATTCA 	4
--------------------------------CCATGCTTCCTTGCATTCAAT 	10
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	4
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	87
---------------------------------------------------------------------ATGGAATGTAAAGAAGTAT 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	21
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	15752
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	362
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGCG 	98
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGCGA 	29
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	652
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGCGAA 	8
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	90
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	2674
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	40
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	2
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAGC 	2
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGG 	3
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	18
------------------------------------------------------------------------GAATGTAAAGAAGTATGGA 	1


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Drosophila melanogaster GSM385748-16264 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
--------------------------------CCATGCTTCCTTGCATTCAATA 	1
--------------------------------CCATGCTTCCTTGCATTCAA 	7
--------------------------------CCATGCTTCCTTGCATTCAAT 	6
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	2
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	587
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	13
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	105


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Drosophila melanogaster GSM399110-16285 TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
--------------------------------CCATGCTTCCTTGCATTCAATA 	20
--------------------------------CCATGCTTCCTTGCATTCAAT 	2
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	2
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	419
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	4
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	4
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	20
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	3


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated TGGAATGTAAAGAAGTATGGAG CCATGCTTCCTTGCATTCAATA down 2 0


Secondary structure

AAAGACCATCCCATATTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATATTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAA
-------------------------------TCCATGCTTCCTTGCATTCAA 	1
-------------------------------TCCATGCTTCCTTGCATTCAAT 	1
--------------------------------CCATGCTTCCTTGCATTCAAT 	3
--------------------------------CCATGCTTCCTTGCATTCAATA 	18
--------------------------------CCATGCTTCCTTGCATTCAA 	3
--------------------------------CCATGCTTCCTTGCATTCA 	1
---------------------------------CATGCTTCCTTGCATTCAAT 	1
-----------------------------------TGCTTCCTTGCATTCAATA 	1
---------------------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	1
----------------------------------------------------------------------TGGAATGTAAAGAAGTATG 	52
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	26
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	39561
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	3191
----------------------------------------------------------------------TGGAATGTAAAGAAGTATGG 	15
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	426
-----------------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	34
------------------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	108
------------------------------------------------------------------------GAATGTAAAGAAGTATGGA 	10
-------------------------------------------------------------------------AATGTAAAGAAGTATGGAG 	29


Overlaps with: MNEST036319 MNEST036320
Overlaps with miRBase pre-miRNAs: dme-mir-1
HuntMi prediction: true miRNA