miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGAATGTAAAGAAGTATGTA

selected species: Caenorhabditis elegans



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGGAATGTAAAGAAGTATGTA CATACTTCCTTACATGCCCATA down 2 1


Secondary structure

TCAAAGTGACCGTACCGAGCTGCATACTTCCTTACATGCCCATACTATATCATAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGGGTGGTAGTGTTT
----------------------CATACTTCCTTACATGCCCATA 	50
----------------------CATACTTCCTTACATGCCCAT 	1
---------------------------------------------------------GGATATGGAATGTAAAGAAGTATGTA 	1
-----------------------------------------------------------ATATGGAATGTAAAGAAGTATGTA 	1
------------------------------------------------------------TATGGAATGTAAAGAAGTATGTA 	14
------------------------------------------------------------TATGGAATGTAAAGAAGTATG 	15
------------------------------------------------------------TATGGAATGTAAAGAAGTATGT 	1
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGTA 	88
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGT 	55
-------------------------------------------------------------ATGGAATGTAAAGAAGTATG 	1
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGA 	12
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAG 	724
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTA 	383707
--------------------------------------------------------------TGGAATGTAAAGAAGTATGT 	17771
--------------------------------------------------------------TGGAATGTAAAGAAGTATG 	2237
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGAA 	2
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGAAC 	1
---------------------------------------------------------------GGAATGTAAAGAAGTATGTA 	388
---------------------------------------------------------------GGAATGTAAAGAAGTATGT 	19
----------------------------------------------------------------GAATGTAAAGAAGTATGTA 	78
----------------------------------------------------------------GAATGTAAAGAAGTATGTAGAAC 	1
----------------------------------------------------------------GAATGTAAAGAAGTATGTAGAACG 	1

Overlaps with: MNEST038266
Overlaps with miRBase pre-miRNAs: cel-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TGGAATGTAAAGAAGTATGTA CATACTTCCTTACATGCCCATA down 2 1


Secondary structure

TCAAAGTGACCGTACCGAGCTGCATACTTCCTTACATGCCCATACTATATCATAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGGGTGGTAGTGTTT
----------------------CATACTTCCTTACATGCCCATA 	693
----------------------CATACTTCCTTACATGCCCAT 	25
----------------------CATACTTCCTTACATGCCCA 	3
-----------------------ATACTTCCTTACATGCCCATAC 	2
-----------------------ATACTTCCTTACATGCCCATA 	2
-----------------------------------------------------------ATATGGAATGTAAAGAAGTATGTA 	4
------------------------------------------------------------TATGGAATGTAAAGAAGTATG 	5
------------------------------------------------------------TATGGAATGTAAAGAAGTATGTA 	2
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGTA 	51
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGT 	8
-------------------------------------------------------------ATGGAATGTAAAGAAGTATG 	1
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAG 	401
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTA 	145710
--------------------------------------------------------------TGGAATGTAAAGAAGTATGT 	7917
--------------------------------------------------------------TGGAATGTAAAGAAGTATG 	548
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGA 	8
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGAA 	6
---------------------------------------------------------------GGAATGTAAAGAAGTATGTA 	593
---------------------------------------------------------------GGAATGTAAAGAAGTATGT 	40
---------------------------------------------------------------GGAATGTAAAGAAGTATGTAG 	1
----------------------------------------------------------------GAATGTAAAGAAGTATGTA 	133
----------------------------------------------------------------GAATGTAAAGAAGTATGTAG 	1

Overlaps with: MNEST038266
Overlaps with miRBase pre-miRNAs: cel-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TGGAATGTAAAGAAGTATGTA CATACTTCCTTACATGCCCATA down 2 1


Secondary structure

TCAAAGTGACCGTACCGAGCTGCATACTTCCTTACATGCCCATACTATATCATAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGGGTGGTAGTGTTT
----------------------CATACTTCCTTACATGCCCATA 	212
----------------------CATACTTCCTTACATGCCCAT 	18
----------------------CATACTTCCTTACATGCCCA 	4
----------------------CATACTTCCTTACATGCCC 	1
-----------------------ATACTTCCTTACATGCCCATA 	5
-----------------------ATACTTCCTTACATGCCCAT 	1
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGTA 	12
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGT 	18
-------------------------------------------------------------ATGGAATGTAAAGAAGTAT 	1
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGA 	6
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAG 	129
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTA 	67637
--------------------------------------------------------------TGGAATGTAAAGAAGTATGT 	4119
--------------------------------------------------------------TGGAATGTAAAGAAGTATG 	589
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGAA 	1
---------------------------------------------------------------GGAATGTAAAGAAGTATGTA 	2
----------------------------------------------------------------GAATGTAAAGAAGTATGTA 	25

Overlaps with: MNEST038266
Overlaps with miRBase pre-miRNAs: cel-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 TGGAATGTAAAGAAGTATGTA CATACTTCCTTACATGCCCATA down 2 1


Secondary structure

TCAAAGTGACCGTACCGAGCTGCATACTTCCTTACATGCCCATACTATATCATAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGGGTGGTAGTGTTT
----------------------CATACTTCCTTACATGCCCATA 	35
-----------------------ATACTTCCTTACATGCCCATAC 	1
------------------------------------------------------------TATGGAATGTAAAGAAGTATG 	8
------------------------------------------------------------TATGGAATGTAAAGAAGTATGTA 	1
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGT 	10
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGTA 	5
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAG 	26
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTA 	16090
--------------------------------------------------------------TGGAATGTAAAGAAGTATGT 	959
--------------------------------------------------------------TGGAATGTAAAGAAGTATG 	145
---------------------------------------------------------------GGAATGTAAAGAAGTATGTA 	7
----------------------------------------------------------------GAATGTAAAGAAGTATGTA 	6

Overlaps with: MNEST038266
Overlaps with miRBase pre-miRNAs: cel-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427297-5679 TGGAATGTAAAGAAGTATGTA CATACTTCCTTACATGCCCATA down 2 1


Secondary structure

TCAAAGTGACCGTACCGAGCTGCATACTTCCTTACATGCCCATACTATATCATAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGGGTGGTAGTGTTT
----------------------CATACTTCCTTACATGCCCATA 	3
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGT 	1
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGTA 	1
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAG 	11
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTA 	5553
--------------------------------------------------------------TGGAATGTAAAGAAGTATGT 	256
--------------------------------------------------------------TGGAATGTAAAGAAGTATG 	24
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGA 	1
---------------------------------------------------------------GGAATGTAAAGAAGTATGT 	1
---------------------------------------------------------------GGAATGTAAAGAAGTATGTA 	1
----------------------------------------------------------------GAATGTAAAGAAGTATGTA 	2

Overlaps with: MNEST038266
Overlaps with miRBase pre-miRNAs: cel-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297751-9445 TGGAATGTAAAGAAGTATGTA CATACTTCCTTACATGCCCATA down 2 1


Secondary structure

TCAAAGTGACCGTACCGAGCTGCATACTTCCTTACATGCCCATACTATATCATAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGGGTGGTAGTGTTT
----------------------CATACTTCCTTACATGCCCAT 	3
----------------------CATACTTCCTTACATGCCCATA 	68
----------------------CATACTTCCTTACATGCCCA 	1
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGT 	4
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGTA 	2
--------------------------------------------------------------TGGAATGTAAAGAAGTATGT 	861
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAG 	22
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTA 	13142
--------------------------------------------------------------TGGAATGTAAAGAAGTATG 	48
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGA 	1
---------------------------------------------------------------GGAATGTAAAGAAGTATGT 	1
---------------------------------------------------------------GGAATGTAAAGAAGTATGTA 	1
----------------------------------------------------------------GAATGTAAAGAAGTATGTA 	13

Overlaps with: MNEST038266
Overlaps with miRBase pre-miRNAs: cel-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297752-9446 TGGAATGTAAAGAAGTATGTA CATACTTCCTTACATGCCCATA down 2 1


Secondary structure

TCAAAGTGACCGTACCGAGCTGCATACTTCCTTACATGCCCATACTATATCATAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGGGTGGTAGTGTTT
----------------------CATACTTCCTTACATGCCCATA 	133
----------------------CATACTTCCTTACATGCCCA 	1
----------------------CATACTTCCTTACATGCCCAT 	4
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGTA 	1
--------------------------------------------------------------TGGAATGTAAAGAAGTATGT 	987
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTA 	19312
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAG 	38
--------------------------------------------------------------TGGAATGTAAAGAAGTATG 	75
---------------------------------------------------------------GGAATGTAAAGAAGTATGTA 	5
----------------------------------------------------------------GAATGTAAAGAAGTATGTA 	16

Overlaps with: MNEST038266
Overlaps with miRBase pre-miRNAs: cel-mir-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM427301-5681 TGGAATGTAAAGAAGTATGTA CATACTTCCTTACATGCCCATA down 2 1


Secondary structure

TCAAAGTGACCGTACCGAGCTGCATACTTCCTTACATGCCCATACTATATCATAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGGGTGGTAGTGTTT
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGTA 	2
-------------------------------------------------------------ATGGAATGTAAAGAAGTATGT 	1
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTA 	2595
--------------------------------------------------------------TGGAATGTAAAGAAGTATGT 	131
--------------------------------------------------------------TGGAATGTAAAGAAGTATG 	18
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAG 	2
--------------------------------------------------------------TGGAATGTAAAGAAGTATGTAGA 	1
---------------------------------------------------------------GGAATGTAAAGAAGTATGTA 	3
----------------------------------------------------------------GAATGTAAAGAAGTATGTA 	1

Overlaps with: MNEST038266
Overlaps with miRBase pre-miRNAs: cel-mir-1
HuntMi prediction: true miRNA