miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions




selected mature miRNA sequence: TGGACGGAGAACTGATAAGGGC

selected species: Danio rerio



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

TTGATTTCAGTCGAACACGTCTCCTTATCACTTTTCCAGCCCAGCTATCCATTTAGTATTCGTTGGACGGAGAACTGATAAGGGCATGTGCCCGATACTCCCTG
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	11
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGG 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGG 	1
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCAT 	3
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	16
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	578
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	71
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	5
----------------------------------------------------------------GGACGGAGAACTGATAAGGGC 	4


Overlaps with: MNEST034335
Overlaps with miRBase pre-miRNAs: dre-mir-184-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540644 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

GGTCAAATGGTCGCTCACATCTCCTTATCACTTTTCCAGCCCAGCTAACGATGGTGAATCCGTTGGACGGAGAACTGATAAGGGCATGTGGCTGACACATACAG
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	11
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGG 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGG 	1
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCAT 	3
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	16
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	578
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	71
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	5
----------------------------------------------------------------GGACGGAGAACTGATAAGGGC 	4


Overlaps with: MNEST034336
Overlaps with miRBase pre-miRNAs: dre-mir-184-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540645 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

TTGATTTCAGTCGAACACGTCTCCTTATCACTTTTCCAGCCCAGCTATCCATTTAGTATTCGTTGGACGGAGAACTGATAAGGGCATGTGCCCGATACTCCCTG
---------------------TCCTTATCACTTTTCCAGCCCAGC 	2
----------------------CCTTATCACTTTTCCAGCCCAGC 	4
-----------------------CTTATCACTTTTCCAGCCCAGC 	2
------------------------TTATCACTTTTCCAGCCCAGC 	9
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	737
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGG 	269
--------------------------------------------------------------TTGGACGGAGAACTGATAAGG 	232
--------------------------------------------------------------TTGGACGGAGAACTGATAAG 	34
--------------------------------------------------------------TTGGACGGAGAACTGATAA 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGCA 	21
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	79062
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	13462
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	2584
---------------------------------------------------------------TGGACGGAGAACTGATAAG 	1031
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCAT 	269
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	4173
----------------------------------------------------------------GGACGGAGAACTGATAAGGGCA 	15
----------------------------------------------------------------GGACGGAGAACTGATAAGG 	9
----------------------------------------------------------------GGACGGAGAACTGATAAGGGCAT 	2
----------------------------------------------------------------GGACGGAGAACTGATAAGGGC 	290
----------------------------------------------------------------GGACGGAGAACTGATAAGGG 	61
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCAT 	1
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCA 	19
-----------------------------------------------------------------GACGGAGAACTGATAAGGG 	6
-----------------------------------------------------------------GACGGAGAACTGATAAGGGC 	23
------------------------------------------------------------------ACGGAGAACTGATAAGGGCAT 	1
------------------------------------------------------------------ACGGAGAACTGATAAGGGC 	1
-------------------------------------------------------------------CGGAGAACTGATAAGGGCA 	1


Overlaps with: MNEST034335
Overlaps with miRBase pre-miRNAs: dre-mir-184-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540645 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

GGTCAAATGGTCGCTCACATCTCCTTATCACTTTTCCAGCCCAGCTAACGATGGTGAATCCGTTGGACGGAGAACTGATAAGGGCATGTGGCTGACACATACAG
---------------------TCCTTATCACTTTTCCAGCCCAGC 	2
----------------------CCTTATCACTTTTCCAGCCCAGC 	4
-----------------------CTTATCACTTTTCCAGCCCAGC 	2
------------------------TTATCACTTTTCCAGCCCAGC 	9
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	737
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGG 	269
--------------------------------------------------------------TTGGACGGAGAACTGATAAGG 	232
--------------------------------------------------------------TTGGACGGAGAACTGATAAG 	34
--------------------------------------------------------------TTGGACGGAGAACTGATAA 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGCA 	21
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	79062
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	13462
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	2584
---------------------------------------------------------------TGGACGGAGAACTGATAAG 	1031
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCAT 	269
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	4173
----------------------------------------------------------------GGACGGAGAACTGATAAGGGCA 	15
----------------------------------------------------------------GGACGGAGAACTGATAAGG 	9
----------------------------------------------------------------GGACGGAGAACTGATAAGGGCAT 	2
----------------------------------------------------------------GGACGGAGAACTGATAAGGGC 	290
----------------------------------------------------------------GGACGGAGAACTGATAAGGG 	61
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCAT 	1
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCA 	19
-----------------------------------------------------------------GACGGAGAACTGATAAGGG 	6
-----------------------------------------------------------------GACGGAGAACTGATAAGGGC 	23
------------------------------------------------------------------ACGGAGAACTGATAAGGGCAT 	1
------------------------------------------------------------------ACGGAGAACTGATAAGGGC 	1
-------------------------------------------------------------------CGGAGAACTGATAAGGGCA 	1


Overlaps with: MNEST034336
Overlaps with miRBase pre-miRNAs: dre-mir-184-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540642 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

TTGATTTCAGTCGAACACGTCTCCTTATCACTTTTCCAGCCCAGCTATCCATTTAGTATTCGTTGGACGGAGAACTGATAAGGGCATGTGCCCGATACTCCCTG
----------------------CCTTATCACTTTTCCAGCCCAGCTAT 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	4
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	2
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	113
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	22
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	3


Overlaps with: MNEST034335
Overlaps with miRBase pre-miRNAs: dre-mir-184-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540642 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

GGTCAAATGGTCGCTCACATCTCCTTATCACTTTTCCAGCCCAGCTAACGATGGTGAATCCGTTGGACGGAGAACTGATAAGGGCATGTGGCTGACACATACAG
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	4
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	2
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	113
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	22
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	3


Overlaps with: MNEST034336
Overlaps with miRBase pre-miRNAs: dre-mir-184-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Danio rerio GSM540643 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

TTGATTTCAGTCGAACACGTCTCCTTATCACTTTTCCAGCCCAGCTATCCATTTAGTATTCGTTGGACGGAGAACTGATAAGGGCATGTGCCCGATACTCCCTG
----------------------CCTTATCACTTTTCCAGCCCAGC 	1
------------------------TTATCACTTTTCCAGCCCAGC 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGCAT 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGG 	17
--------------------------------------------------------------TTGGACGGAGAACTGATAAGG 	3
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	45
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	25
---------------------------------------------------------------TGGACGGAGAACTGATAAG 	5
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCAT 	7
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	78
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	2240
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	342
----------------------------------------------------------------GGACGGAGAACTGATAAGGGC 	1
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCA 	1


Overlaps with: MNEST034335
Overlaps with miRBase pre-miRNAs: dre-mir-184-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Danio rerio GSM540643 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

GGTCAAATGGTCGCTCACATCTCCTTATCACTTTTCCAGCCCAGCTAACGATGGTGAATCCGTTGGACGGAGAACTGATAAGGGCATGTGGCTGACACATACAG
----------------------CCTTATCACTTTTCCAGCCCAGC 	1
------------------------TTATCACTTTTCCAGCCCAGC 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGCAT 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGG 	17
--------------------------------------------------------------TTGGACGGAGAACTGATAAGG 	3
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	45
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	25
---------------------------------------------------------------TGGACGGAGAACTGATAAG 	5
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCAT 	7
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	78
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	2240
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	342
----------------------------------------------------------------GGACGGAGAACTGATAAGGGC 	1
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCA 	1


Overlaps with: MNEST034336
Overlaps with miRBase pre-miRNAs: dre-mir-184-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Danio rerio GSM540646 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

TTGATTTCAGTCGAACACGTCTCCTTATCACTTTTCCAGCCCAGCTATCCATTTAGTATTCGTTGGACGGAGAACTGATAAGGGCATGTGCCCGATACTCCCTG
---------------------TCCTTATCACTTTTCCAGCCCA 	2
---------------------TCCTTATCACTTTTCCAGCCCAGCT 	1
---------------------TCCTTATCACTTTTCCAGCCCAG 	3
---------------------TCCTTATCACTTTTCCAGCCC 	1
---------------------TCCTTATCACTTTTCCAGCCCAGC 	8
----------------------CCTTATCACTTTTCCAGCCCA 	5
----------------------CCTTATCACTTTTCCAGCCCAGC 	95
----------------------CCTTATCACTTTTCCAGCCCAGCT 	3
----------------------CCTTATCACTTTTCCAGCCCAG 	1
-----------------------CTTATCACTTTTCCAGCCCAGC 	1
------------------------TTATCACTTTTCCAGCCCAGC 	16
-------------------------TATCACTTTTCCAGCCCAGC 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGG 	1154
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	5767
--------------------------------------------------------------TTGGACGGAGAACTGATAAGG 	972
--------------------------------------------------------------TTGGACGGAGAACTGATAAG 	68
--------------------------------------------------------------TTGGACGGAGAACTGATAA 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGCAT 	11
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGCA 	251
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	39734
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	4856
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	26169
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	365343
---------------------------------------------------------------TGGACGGAGAACTGATAAG 	984
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCAT 	2481
----------------------------------------------------------------GGACGGAGAACTGATAAGG 	4
----------------------------------------------------------------GGACGGAGAACTGATAAGGGCAT 	4
----------------------------------------------------------------GGACGGAGAACTGATAAGGGCA 	38
----------------------------------------------------------------GGACGGAGAACTGATAAGGGC 	465
----------------------------------------------------------------GGACGGAGAACTGATAAGGG 	47
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCA 	108
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCAT 	18
-----------------------------------------------------------------GACGGAGAACTGATAAGGG 	1
-----------------------------------------------------------------GACGGAGAACTGATAAGGGC 	26
------------------------------------------------------------------ACGGAGAACTGATAAGGGC 	12
------------------------------------------------------------------ACGGAGAACTGATAAGGGCAT 	2
------------------------------------------------------------------ACGGAGAACTGATAAGGGCA 	1
-------------------------------------------------------------------CGGAGAACTGATAAGGGCA 	3


Overlaps with: MNEST034335
Overlaps with miRBase pre-miRNAs: dre-mir-184-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Danio rerio GSM540646 TGGACGGAGAACTGATAAGGGC CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

GGTCAAATGGTCGCTCACATCTCCTTATCACTTTTCCAGCCCAGCTAACGATGGTGAATCCGTTGGACGGAGAACTGATAAGGGCATGTGGCTGACACATACAG
---------------------TCCTTATCACTTTTCCAGCCCA 	2
---------------------TCCTTATCACTTTTCCAGCCCAGCT 	1
---------------------TCCTTATCACTTTTCCAGCCCAG 	3
---------------------TCCTTATCACTTTTCCAGCCC 	1
---------------------TCCTTATCACTTTTCCAGCCCAGC 	8
----------------------CCTTATCACTTTTCCAGCCCA 	5
----------------------CCTTATCACTTTTCCAGCCCAGC 	95
----------------------CCTTATCACTTTTCCAGCCCAGCT 	3
----------------------CCTTATCACTTTTCCAGCCCAG 	1
-----------------------CTTATCACTTTTCCAGCCCAGC 	1
------------------------TTATCACTTTTCCAGCCCAGC 	16
-------------------------TATCACTTTTCCAGCCCAGC 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGG 	1154
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGC 	5767
--------------------------------------------------------------TTGGACGGAGAACTGATAAGG 	972
--------------------------------------------------------------TTGGACGGAGAACTGATAAG 	68
--------------------------------------------------------------TTGGACGGAGAACTGATAA 	1
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGCAT 	11
--------------------------------------------------------------TTGGACGGAGAACTGATAAGGGCA 	251
---------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	39734
---------------------------------------------------------------TGGACGGAGAACTGATAAGG 	4856
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCA 	26169
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGC 	365343
---------------------------------------------------------------TGGACGGAGAACTGATAAG 	984
---------------------------------------------------------------TGGACGGAGAACTGATAAGGGCAT 	2481
----------------------------------------------------------------GGACGGAGAACTGATAAGG 	4
----------------------------------------------------------------GGACGGAGAACTGATAAGGGCAT 	4
----------------------------------------------------------------GGACGGAGAACTGATAAGGGCA 	38
----------------------------------------------------------------GGACGGAGAACTGATAAGGGC 	465
----------------------------------------------------------------GGACGGAGAACTGATAAGGG 	47
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCA 	108
-----------------------------------------------------------------GACGGAGAACTGATAAGGGCAT 	18
-----------------------------------------------------------------GACGGAGAACTGATAAGGG 	1
-----------------------------------------------------------------GACGGAGAACTGATAAGGGC 	26
------------------------------------------------------------------ACGGAGAACTGATAAGGGC 	12
------------------------------------------------------------------ACGGAGAACTGATAAGGGCAT 	2
------------------------------------------------------------------ACGGAGAACTGATAAGGGCA 	1
-------------------------------------------------------------------CGGAGAACTGATAAGGGCA 	3


Overlaps with: MNEST034336
Overlaps with miRBase pre-miRNAs: dre-mir-184-2
HuntMi prediction: true miRNA