miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGACGGAGAACTGATAAGGGT

selected species: Gallus gallus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TGGACGGAGAACTGATAAGGGT CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

GATCCCGTGGCCGCTCTCACCCCCTTATCACTTTTCCAGCCCAGCTTCTTCGCTCTGACTGTTGGACGGAGAACTGATAAGGGTGTGCGGGTGGCACGAGCAC
-------------------------------------------------------------TTGGACGGAGAACTGATAAGGGT 	2
--------------------------------------------------------------TGGACGGAGAACTGATAAGGGTG 	2
--------------------------------------------------------------TGGACGGAGAACTGATAAGGGT 	223
--------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	9
---------------------------------------------------------------GGACGGAGAACTGATAAGGGT 	1

Overlaps with: MNEST025979
Overlaps with miRBase pre-miRNAs: gga-mir-184
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM388803 TGGACGGAGAACTGATAAGGGT CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

GATCCCGTGGCCGCTCTCACCCCCTTATCACTTTTCCAGCCCAGCTTCTTCGCTCTGACTGTTGGACGGAGAACTGATAAGGGTGTGCGGGTGGCACGAGCAC
--------------------------------------------------------------TGGACGGAGAACTGATAAGGGT 	1168
--------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	72
--------------------------------------------------------------TGGACGGAGAACTGATAAG 	17

Overlaps with: MNEST025979
Overlaps with miRBase pre-miRNAs: gga-mir-184
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TGGACGGAGAACTGATAAGGGT CCTTATCACTTTTCCAGCCCAGC down 4 1


Secondary structure

GATCCCGTGGCCGCTCTCACCCCCTTATCACTTTTCCAGCCCAGCTTCTTCGCTCTGACTGTTGGACGGAGAACTGATAAGGGTGTGCGGGTGGCACGAGCAC
--------------------------------------------------------------TGGACGGAGAACTGATAAGG 	1
--------------------------------------------------------------TGGACGGAGAACTGATAAGGG 	2
--------------------------------------------------------------TGGACGGAGAACTGATAAGGGT 	88
--------------------------------------------------------------TGGACGGAGAACTGATAAGGGTG 	2
--------------------------------------------------------------TGGACGGAGAACTGATAAGGGTGT 	1

Overlaps with: MNEST025979
Overlaps with miRBase pre-miRNAs: gga-mir-184
HuntMi prediction: true miRNA