miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAGAAGCAGGGCACGTGAG

selected species: Oryza sativa



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGGAGAAGCAGGGCACGTGAG CATGTGTCCGTCTTCTCCACC up 2 0


Secondary structure

CTTGTGCAGGGTGGAGAAGCAGGGCACGTGAGCGGCCATCCAGTGTAGCTTCGCTGCGCGTCCATGGCGGCGAACGCGCGTGATCTGGAGTTTGGATGGTCGTTCATGTGTCCGTCTTCTCCACCGAGCACTG
----TGCAGGGTGGAGAAGCAGGGCA 	1
-----------TGGAGAAGCAGGGCACGTGAG 	182
-----------TGGAGAAGCAGGGCACGTG 	3
-------------------CAGGGCACGTGAGCGGCCATC 	1
--------------------AGGGCACGTGAGCGGCCATCC 	7
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTC 	17
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTCT 	1


Overlaps with: MNEST041935 MNEST048842
Overlaps with miRBase pre-miRNAs: osa-MIR164e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM571078-22531 TGGAGAAGCAGGGCACGTGAG CATGTGTCCGTCTTCTCCACC up 2 0


Secondary structure

CTTGTGCAGGGTGGAGAAGCAGGGCACGTGAGCGGCCATCCAGTGTAGCTTCGCTGCGCGTCCATGGCGGCGAACGCGCGTGATCTGGAGTTTGGATGGTCGTTCATGTGTCCGTCTTCTCCACCGAGCACTG
-----------TGGAGAAGCAGGGCACGTGAG 	107
-----------TGGAGAAGCAGGGCACGTG 	2
------------GGAGAAGCAGGGCACGTGAG 	6
-------------GAGAAGCAGGGCACGTGAG 	1
--------------------AGGGCACGTGAGCGGCCATCC 	2
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTC 	3
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTCT 	1


Overlaps with: MNEST041935 MNEST048842
Overlaps with miRBase pre-miRNAs: osa-MIR164e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM686040-31373 TGGAGAAGCAGGGCACGTGAG CATGTGTCCGTCTTCTCCACC up 2 0


Secondary structure

CTTGTGCAGGGTGGAGAAGCAGGGCACGTGAGCGGCCATCCAGTGTAGCTTCGCTGCGCGTCCATGGCGGCGAACGCGCGTGATCTGGAGTTTGGATGGTCGTTCATGTGTCCGTCTTCTCCACCGAGCACTG
-----------TGGAGAAGCAGGGCACGTGAGCGG 	37
-----------TGGAGAAGCAGGGCACGTGAGC 	12
-----------TGGAGAAGCAGGGCACGTGAG 	8493
-----------TGGAGAAGCAGGGCACGTGA 	12
-----------TGGAGAAGCAGGGCACGTG 	15
------------GGAGAAGCAGGGCACGTGAGCGG 	1
------------GGAGAAGCAGGGCACGTGAG 	62
-------------GAGAAGCAGGGCACGTGAG 	1
--------------AGAAGCAGGGCACGTGAGCGG 	1
-------------------CAGGGCACGTGAGCGGCCATCC 	1
-------------------CAGGGCACGTGAGCGGCCATC 	2
--------------------AGGGCACGTGAGCGGCCATCC 	10
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTC 	27
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGT 	1
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCG 	1


Overlaps with: MNEST041935 MNEST048842
Overlaps with miRBase pre-miRNAs: osa-MIR164e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM571077-22529 TGGAGAAGCAGGGCACGTGAG CATGTGTCCGTCTTCTCCACC up 2 0


Secondary structure

CTTGTGCAGGGTGGAGAAGCAGGGCACGTGAGCGGCCATCCAGTGTAGCTTCGCTGCGCGTCCATGGCGGCGAACGCGCGTGATCTGGAGTTTGGATGGTCGTTCATGTGTCCGTCTTCTCCACCGAGCACTG
-----------TGGAGAAGCAGGGCACGTGAG 	109
-----------TGGAGAAGCAGGGCACGTGAGCGG 	2
-----------TGGAGAAGCAGGGCACGTG 	1
------------GGAGAAGCAGGGCACGTGAG 	7
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTC 	7


Overlaps with: MNEST041935 MNEST048842
Overlaps with miRBase pre-miRNAs: osa-MIR164e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM686039-31370 TGGAGAAGCAGGGCACGTGAG CATGTGTCCGTCTTCTCCACC up 2 0


Secondary structure

CTTGTGCAGGGTGGAGAAGCAGGGCACGTGAGCGGCCATCCAGTGTAGCTTCGCTGCGCGTCCATGGCGGCGAACGCGCGTGATCTGGAGTTTGGATGGTCGTTCATGTGTCCGTCTTCTCCACCGAGCACTG
-----------TGGAGAAGCAGGGCACGTGAGCGG 	22
-----------TGGAGAAGCAGGGCACGTGAGC 	8
-----------TGGAGAAGCAGGGCACGTGAG 	4868
-----------TGGAGAAGCAGGGCACGTGA 	12
-----------TGGAGAAGCAGGGCACGTG 	8
------------GGAGAAGCAGGGCACGTGAG 	36
------------GGAGAAGCAGGGCACGTGA 	1
-------------GAGAAGCAGGGCACGTGAGC 	1
-------------GAGAAGCAGGGCACGTGAG 	5
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTC 	18
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGT 	2
--------------------------------------------------------------------------------------------------------CATGTGTCCGTCTTCTCCACC 	1


Overlaps with: MNEST041935 MNEST048842
Overlaps with miRBase pre-miRNAs: osa-MIR164e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM693279 TGGAGAAGCAGGGCACGTGAG CATGTGTCCGTCTTCTCCACC up 2 0


Secondary structure

CTTGTGCAGGGTGGAGAAGCAGGGCACGTGAGCGGCCATCCAGTGTAGCTTCGCTGCGCGTCCATGGCGGCGAACGCGCGTGATCTGGAGTTTGGATGGTCGTTCATGTGTCCGTCTTCTCCACCGAGCACTG
--TGTGCAGGGTGGAGAAGCAGGGCA 	2
----TGCAGGGTGGAGAAGCAGGGCA 	1
-----------TGGAGAAGCAGGGCACGTGAG 	8319
-----------TGGAGAAGCAGGGCACGTGAGCGG 	22
-----------TGGAGAAGCAGGGCACGTG 	10
-----------TGGAGAAGCAGGGCACGTGA 	4
-----------TGGAGAAGCAGGGCACGTGAGC 	3
------------GGAGAAGCAGGGCACGTGAG 	71
-------------GAGAAGCAGGGCACGTGAG 	3
-----------------AGCAGGGCACGTGAGCGGCCA 	1
-------------------CAGGGCACGTGAGCGGCCATC 	40
-------------------CAGGGCACGTGAGCGGCCATCC 	2
--------------------AGGGCACGTGAGCGGCCATCC 	57
--------------------AGGGCACGTGAGCGGCCATCCA 	2
--------------------AGGGCACGTGAGCGGCCATC 	1
---------------------GGGCACGTGAGCGGCCATCC 	4
----------------------------------------------------------------------------------------------GATGGTCGTTCATGTGTCC 	1
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTC 	422
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGT 	5
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCG 	3
-----------------------------------------------------------------------------------------------ATGGTCGTTCATGTGTCCGTCT 	2
------------------------------------------------------------------------------------------------TGGTCGTTCATGTGTCCGTCT 	4
------------------------------------------------------------------------------------------------TGGTCGTTCATGTGTCCGTC 	4
--------------------------------------------------------------------------------------------------------CATGTGTCCGTCTTCTCCACC 	3


Overlaps with: MNEST041935 MNEST048842
Overlaps with miRBase pre-miRNAs: osa-MIR164e
HuntMi prediction: true miRNA