miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAGAAGCAGGGCACGTGCA

selected species: Arabidopsis thaliana



26 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCA 	213
-------------------------------TGGAGAAGCAGGGCACGTGC 	21
-------------------------------TGGAGAAGCAGGGCACGTG 	1
------------------------------------------------------------------------------------------CACGTACTTAACTTCTCCAAC 	2


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM304282 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCA 	213
-----------TGGAGAAGCAGGGCACGTGC 	21
-----------TGGAGAAGCAGGGCACGTG 	1
-------------------CAGGGCACGTGCATTACTAGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCATCTTCACCATC 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM415786-5994 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCAA 	4
-------------------------------TGGAGAAGCAGGGCACGTGCA 	8333
-------------------------------TGGAGAAGCAGGGCACGTGC 	30
-------------------------------TGGAGAAGCAGGGCACGTG 	13
--------------------------------GGAGAAGCAGGGCACGTGCAA 	2
--------------------------------GGAGAAGCAGGGCACGTGCA 	69
---------------------------------GAGAAGCAGGGCACGTGCA 	2
------------------------------------------------------------------------------------------CACGTACTTAACTTCTCCAAC 	6


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM415786-5994 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
----------ATGGAGAAGCAGGGCACGTGCA 	2
----------ATGGAGAAGCAGGGCACGTGC 	1
-----------TGGAGAAGCAGGGCACGTGCATT 	10
-----------TGGAGAAGCAGGGCACGTGCAT 	42
-----------TGGAGAAGCAGGGCACGTGCA 	8333
-----------TGGAGAAGCAGGGCACGTGC 	30
-----------TGGAGAAGCAGGGCACGTG 	13
------------GGAGAAGCAGGGCACGTGCA 	69
-------------GAGAAGCAGGGCACGTGCA 	2
------------------GCAGGGCACGTGCATTACTAG 	5
-------------------CAGGGCACGTGCATTACTAGC 	6
--------------------------CGTGCATTACTAGCTCATAT 	1
---------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCATCTTCACCATC 	22



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM424847-4989 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCAAA 	1
-------------------------------TGGAGAAGCAGGGCACGTGCAA 	1
-------------------------------TGGAGAAGCAGGGCACGTGCA 	2362
-------------------------------TGGAGAAGCAGGGCACGTGC 	6
-------------------------------TGGAGAAGCAGGGCACGTG 	7
---------------------------------GAGAAGCAGGGCACGTGCA 	1


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM424847-4989 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCATT 	4
-----------TGGAGAAGCAGGGCACGTGCAT 	17
-----------TGGAGAAGCAGGGCACGTGCA 	2362
-----------TGGAGAAGCAGGGCACGTGC 	6
-----------TGGAGAAGCAGGGCACGTG 	7
-------------GAGAAGCAGGGCACGTGCA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM415785 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCAAA 	1
-------------------------------TGGAGAAGCAGGGCACGTGCAA 	1
-------------------------------TGGAGAAGCAGGGCACGTGCA 	832
-------------------------------TGGAGAAGCAGGGCACGTGC 	6
-------------------------------TGGAGAAGCAGGGCACGTG 	3
--------------------------------GGAGAAGCAGGGCACGTGCA 	12
------------------------------------------------------------------------------------------CACGTACTTAACTTCTCCAAC 	14
-------------------------------------------------------------------------------------------ACGTACTTAACTTCTCCAAC 	1


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM415785 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCATT 	2
-----------TGGAGAAGCAGGGCACGTGCAT 	9
-----------TGGAGAAGCAGGGCACGTGCA 	832
-----------TGGAGAAGCAGGGCACGTGC 	6
-----------TGGAGAAGCAGGGCACGTG 	3
------------GGAGAAGCAGGGCACGTGCA 	12
--------------------AGGGCACGTGCATTACTAGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCATCTTCACCATC 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM366870 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCAA 	1
-------------------------------TGGAGAAGCAGGGCACGTGCA 	82
-------------------------------TGGAGAAGCAGGGCACGTG 	1
-------------------------------TGGAGAAGCAGGGCACGTGC 	3
------------------------------------------------------------------------------------------CACGTACTTAACTTCTCCAAC 	1


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM366870 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCATT 	1
-----------TGGAGAAGCAGGGCACGTGCA 	82
-----------TGGAGAAGCAGGGCACGTG 	1
-----------TGGAGAAGCAGGGCACGTGC 	3
-------------------------------------------------------------------------------------------------------------------------------ATGAGTTAGTTCTTCATGTGC 	1
--------------------------------------------------------------------------------------------------------------------------------TGAGTTAGTTCTTCATGTGCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCATCTTCACCATC 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Arabidopsis thaliana GSM366869 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCA 	12


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Arabidopsis thaliana GSM366869 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCA 	12
---------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCATCTTCACCATC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Arabidopsis thaliana GSM304284 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCAA 	2
-------------------------------TGGAGAAGCAGGGCACGTGCA 	62
-------------------------------TGGAGAAGCAGGGCACGTGC 	24
------------------------------------------------------------------------------------------CACGTACTTAACTTCTCCAA 	1


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Arabidopsis thaliana GSM304284 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCA 	62
-----------TGGAGAAGCAGGGCACGTGC 	24



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Arabidopsis thaliana GSM366866 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCA 	417
-------------------------------TGGAGAAGCAGGGCACGTG 	3
-------------------------------TGGAGAAGCAGGGCACGTGC 	9


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Arabidopsis thaliana GSM366866 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCA 	417
-----------TGGAGAAGCAGGGCACGTGCATT 	1
-----------TGGAGAAGCAGGGCACGTG 	3
-----------TGGAGAAGCAGGGCACGTGC 	9
--------------------------------------------------------------------------------------------------------------------------------TGAGTTAGTTCTTCATGTGCC 	6
---------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCATCTTCACCATC 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Arabidopsis thaliana GSM424848-4990 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCAAA 	2
-------------------------------TGGAGAAGCAGGGCACGTGCA 	3151
-------------------------------TGGAGAAGCAGGGCACGTGC 	10
-------------------------------TGGAGAAGCAGGGCACGTG 	5
--------------------------------GGAGAAGCAGGGCACGTGCA 	4
---------------------------------GAGAAGCAGGGCACGTGCA 	2


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Arabidopsis thaliana GSM424848-4990 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
----------ATGGAGAAGCAGGGCACGTGC 	2
-----------TGGAGAAGCAGGGCACGTGCATT 	2
-----------TGGAGAAGCAGGGCACGTGCAT 	16
-----------TGGAGAAGCAGGGCACGTGCA 	3151
-----------TGGAGAAGCAGGGCACGTGC 	10
-----------TGGAGAAGCAGGGCACGTG 	5
------------GGAGAAGCAGGGCACGTGCA 	4
-------------GAGAAGCAGGGCACGTGCA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Arabidopsis thaliana GSM304283 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCA 	21
-------------------------------TGGAGAAGCAGGGCACGTGC 	1
------------------------------------------------------------------------------------------CACGTACTTAACTTCTCCAAC 	1


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Arabidopsis thaliana GSM304283 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCA 	21
-----------TGGAGAAGCAGGGCACGTGC 	1
-------------------------------------------------------------------------------------------------------------------------------ATGAGTTAGTTCTTCATGTGC 	3
--------------------------------------------------------------------------------------------------------------------------------TGAGTTAGTTCTTCATGTGC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Arabidopsis thaliana GSM304285 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
-------------------------------TGGAGAAGCAGGGCACGTGCA 	14


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Arabidopsis thaliana GSM304285 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCA 	14
--------------------------------------------------------------------------------------------------------------------------------TGAGTTAGTTCTTCATGTGCC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Arabidopsis thaliana GSM518432-13544 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
------------------------------TTGGAGAAGCAGGGCACGTGC 	1
-------------------------------TGGAGAAGCAGGGCACGTGC 	28
-------------------------------TGGAGAAGCAGGGCACGTGCA 	506
-------------------------------TGGAGAAGCAGGGCACGTG 	1
---------------------------------GAGAAGCAGGGCACGTGCA 	1
------------------------------------------------------------------------------------------CACGTACTTAACTTCTCCAAC 	2


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Arabidopsis thaliana GSM518432-13544 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCATT 	2
-----------TGGAGAAGCAGGGCACGTGC 	28
-----------TGGAGAAGCAGGGCACGTGCA 	506
-----------TGGAGAAGCAGGGCACGTG 	1
-------------GAGAAGCAGGGCACGTGCA 	1
-------------------------------------------------------------------------------------------------------------------------------ATGAGTTAGTTCTTCATGTGC 	2
--------------------------------------------------------------------------------------------------------------------------------TGAGTTAGTTCTTCATGTGCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCATCTTCACCATC 	5



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
25 Arabidopsis thaliana GSM277608 TGGAGAAGCAGGGCACGTGCA CACGTACTTAACTTCTCCAAC up 3 0


Secondary structure

TGCTTGGAAATGCGGGTGAGAATCTCCATGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAAATCCGTCTCATTTGCTTATTTGCACGTACTTAACTTCTCCAACATGAGCTCTTCACCCATTGATGTTATAT
----------------------------TGTTGGAGAAGCAGGGCACGTG 	1
------------------------------TTGGAGAAGCAGGGCACGTGC 	1
-------------------------------TGGAGAAGCAGGGCACGTGCA 	1835
-------------------------------TGGAGAAGCAGGGCACGTGCAAA 	6
-------------------------------TGGAGAAGCAGGGCACGTGC 	4
-------------------------------TGGAGAAGCAGGGCACGTG 	4
--------------------------------GGAGAAGCAGGGCACGTGCAA 	1
--------------------------------GGAGAAGCAGGGCACGTGCA 	33
------------------------------------------------------------------------------------------CACGTACTTAACTTCTCCAAC 	5


Overlaps with: MNEST040027 MNEST046940
Overlaps with miRBase pre-miRNAs: ath-MIR164a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
26 Arabidopsis thaliana GSM277608 TGGAGAAGCAGGGCACGTGCA CATGTGCCCATCTTCACCATC up 5 0


Secondary structure

GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATATATACACTCTCACCACAAATGCGTGTATATATGCGGAATTTTGTGATATAGATGTGTGTGTGTGTTGAGTGTGATGATATGGATGAGTTAGTTCTTCATGTGCCCATCTTCACCATCATGACCAC
-----------TGGAGAAGCAGGGCACGTGCA 	1835
-----------TGGAGAAGCAGGGCACGTGCATT 	2
-----------TGGAGAAGCAGGGCACGTGC 	4
-----------TGGAGAAGCAGGGCACGTGCAT 	9
-----------TGGAGAAGCAGGGCACGTG 	4
------------GGAGAAGCAGGGCACGTGCA 	33



HuntMi prediction: true miRNA