miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGAGAAGCAGGGCACGTGCA

selected species: Brachypodium distachyon



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGGAGAAGCAGGGCACGTGCA CATGTGCCCTTCTTCTCCACC up 1 0


Secondary structure

GGAGTGGACATATGAGGCGAGGCGCGCGAGGTGGAGAAGCAGGGCACGTGCATTCGTTCCAGCTCGCCGCCGGTGTGCCGCGCCGCGGCCTGGGCGCGCGTGTCGCCCGAGCGGCCGGCCATGCGCGTGTGTGTGCATGCATGTGCCCTTCTTCTCCACCGCGCAAGCCTCGCCTGCGAACGCGCGCG
-------------------------------TGGAGAAGCAGGGCACGTGCA 	309
-------------------------------TGGAGAAGCAGGGCACGTGC 	45
-------------------------------TGGAGAAGCAGGGCACGTG 	1
---------------------------------GAGAAGCAGGGCACGTGCA 	1
-------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCTTCTTCTCCACC 	8
-------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCTTCTTCTCCAC 	2
-------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCTTCTTCTCCA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------TGCCCTTCTTCTCCACCGCGC 	15



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TGGAGAAGCAGGGCACGTGCA CACGCGCTCCCCTTCTCCACC up 3 0


Secondary structure

TGCTTCACAAATTTGGTGAGAATGCCCCTGTTGGAGAAGCAGGGCACGTGCAAAGATCGGAGCACGTTTCGTATGTGATGTACGTATGTGCATGGATCGCTGTGCACGCGCTCCCCTTCTCCACCATGGCCTTCTTACCACAGCTAGCCTTCG
------------------------------TTGGAGAAGCAGGGCACGTGC 	1
-------------------------------TGGAGAAGCAGGGCACGTGCA 	309
-------------------------------TGGAGAAGCAGGGCACGTGC 	45
-------------------------------TGGAGAAGCAGGGCACGTG 	1
---------------------------------GAGAAGCAGGGCACGTGCA 	1


Overlaps with: MNEST041741
Overlaps with miRBase pre-miRNAs: bdi-MIR164e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Brachypodium distachyon GSM506620-12051 TGGAGAAGCAGGGCACGTGCA CATGTGTTCTTCTCCTCCATC up 2 0


Secondary structure

GCTCAGCGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATGCAACTAGAGCTTAGCTAGTGTCAATTCTTCCATCTCTTGTGCCTGGCCGGGATCGATCTTATATACCGAGCTTAATTTGGCACCTATTGGATGCTGCATGCATGTGTTCTTCTCCTCCATCACGGTCTTCATTTCTCTC
--------------------TTGGAGAAGCAGGGCACGTGC 	1
---------------------TGGAGAAGCAGGGCACGTGCA 	309
---------------------TGGAGAAGCAGGGCACGTGC 	45
---------------------TGGAGAAGCAGGGCACGTG 	1
-----------------------GAGAAGCAGGGCACGTGCA 	1
-----------------------------CAGGGCACGTGCATGCATGCAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------TGCTGCATGCATGTGTTCTTC 	2
--------------------------------------------------------------------------------------------------------------------------------------------GCTGCATGCATGTGTTCTTCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------CATGTGTTCTTCTCCTCCATC 	4


Overlaps with: MNEST041738
Overlaps with miRBase pre-miRNAs: bdi-MIR164b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Brachypodium distachyon GSM506621-23192 TGGAGAAGCAGGGCACGTGCA CACGCGCTCCCCTTCTCCACC up 3 0


Secondary structure

TGCTTCACAAATTTGGTGAGAATGCCCCTGTTGGAGAAGCAGGGCACGTGCAAAGATCGGAGCACGTTTCGTATGTGATGTACGTATGTGCATGGATCGCTGTGCACGCGCTCCCCTTCTCCACCATGGCCTTCTTACCACAGCTAGCCTTCG
-------------------------------TGGAGAAGCAGGGCACGTG 	5
-------------------------------TGGAGAAGCAGGGCACGTGCAA 	1
-------------------------------TGGAGAAGCAGGGCACGTGC 	14
-------------------------------TGGAGAAGCAGGGCACGTGCA 	1972
--------------------------------GGAGAAGCAGGGCACGTGC 	1
--------------------------------GGAGAAGCAGGGCACGTGCA 	17


Overlaps with: MNEST041741
Overlaps with miRBase pre-miRNAs: bdi-MIR164e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Brachypodium distachyon GSM506621-23192 TGGAGAAGCAGGGCACGTGCA CATGTGCCCTTCTTCTCCACC up 1 0


Secondary structure

GGAGTGGACATATGAGGCGAGGCGCGCGAGGTGGAGAAGCAGGGCACGTGCATTCGTTCCAGCTCGCCGCCGGTGTGCCGCGCCGCGGCCTGGGCGCGCGTGTCGCCCGAGCGGCCGGCCATGCGCGTGTGTGTGCATGCATGTGCCCTTCTTCTCCACCGCGCAAGCCTCGCCTGCGAACGCGCGCG
----------------GCGAGGCGCGCGAGGTGGAGA 	1
---------------------------GAGGTGGAGAAGCAGGGCACGTGC 	1
---------------------------GAGGTGGAGAAGCAGGGCACG 	45
---------------------------GAGGTGGAGAAGCAGGGCAC 	1
-------------------------------TGGAGAAGCAGGGCACGTGCAT 	3
-------------------------------TGGAGAAGCAGGGCACGTG 	5
-------------------------------TGGAGAAGCAGGGCACGTGCATT 	1
-------------------------------TGGAGAAGCAGGGCACGTGC 	14
-------------------------------TGGAGAAGCAGGGCACGTGCA 	1972
--------------------------------GGAGAAGCAGGGCACGTGC 	1
--------------------------------GGAGAAGCAGGGCACGTGCAT 	1
--------------------------------GGAGAAGCAGGGCACGTGCA 	17
-------------------------------------------------------------------------------------------------------------------------------------------CATGTGCCCTTCTTCTCCACC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Brachypodium distachyon GSM506621-23192 TGGAGAAGCAGGGCACGTGCA CATGTGTTCTTCTCCTCCATC up 2 0


Secondary structure

GCTCAGCGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATGCAACTAGAGCTTAGCTAGTGTCAATTCTTCCATCTCTTGTGCCTGGCCGGGATCGATCTTATATACCGAGCTTAATTTGGCACCTATTGGATGCTGCATGCATGTGTTCTTCTCCTCCATCACGGTCTTCATTTCTCTC
---------------------TGGAGAAGCAGGGCACGTGCAT 	3
---------------------TGGAGAAGCAGGGCACGTG 	5
---------------------TGGAGAAGCAGGGCACGTGC 	14
---------------------TGGAGAAGCAGGGCACGTGCA 	1972
----------------------GGAGAAGCAGGGCACGTGC 	1
----------------------GGAGAAGCAGGGCACGTGCAT 	1
----------------------GGAGAAGCAGGGCACGTGCA 	17
-----------------------------CAGGGCACGTGCATGCATGCAA 	4
------------------------------AGGGCACGTGCATGCATGCAAC 	2
------------------------------AGGGCACGTGCATGCATGCAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------TGCATGTGTTCTTCTCCTCCA 	1


Overlaps with: MNEST041738
Overlaps with miRBase pre-miRNAs: bdi-MIR164b
HuntMi prediction: true miRNA