miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAGAAGCAGGGCACGTGCA

selected species: Vitis vinifera



12 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TGGAGAAGCAGGGCACGTGCA CACGTGCTCCCCTTCTCCAAC up 2 0


Secondary structure

TAGCTCCTTGTTGGAGAAGCAGGGCACGTGCAGATTTGCCTCACTTTTCCCCCTTTTTTCTTCTTTACTCCCACCACCGCCCACAGGCTTGCACGTGCTCCCCTTCTCCAACATGGGTTC
----------TTGGAGAAGCAGGGCACGTGC 	2
-----------TGGAGAAGCAGGGCACGTGCAGAT 	1
-----------TGGAGAAGCAGGGCACGTGCAG 	2
-----------TGGAGAAGCAGGGCACGTGCA 	26425
-----------TGGAGAAGCAGGGCACGTGC 	206
-----------TGGAGAAGCAGGGCACGTG 	32
------------GGAGAAGCAGGGCACGTGCA 	149
------------GGAGAAGCAGGGCACGTGC 	3
-------------GAGAAGCAGGGCACGTGCA 	7



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458927 TGGAGAAGCAGGGCACGTGCA CATGTGCCCCTCTTCCCCATC up 5 0


Secondary structure

GTTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATGCACCACAAACCAATAATCTTTTGCTCGAGTTAGACTCTTGCTTGCTGCTTTGATTTTTTTTGTTAGCACCAGCGAGAGTTGGTTCTTCATGTGCCCCTCTTCCCCATCATGACCAC
----------ATGGAGAAGCAGGGCACGTGCA 	2
----------ATGGAGAAGCAGGGCACGTGC 	5
-----------TGGAGAAGCAGGGCACGTGCATT 	36
-----------TGGAGAAGCAGGGCACGTGCAT 	147
-----------TGGAGAAGCAGGGCACGTGCA 	26425
-----------TGGAGAAGCAGGGCACGTGC 	206
-----------TGGAGAAGCAGGGCACGTG 	32
------------GGAGAAGCAGGGCACGTGCAT 	6
------------GGAGAAGCAGGGCACGTGCA 	149
------------GGAGAAGCAGGGCACGTGC 	3
-------------GAGAAGCAGGGCACGTGCA 	7


Overlaps with: MNEST041581 MNEST054787
Overlaps with miRBase pre-miRNAs: vvi-MIR164c
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458927 TGGAGAAGCAGGGCACGTGCA CACGTGCTCCCCTTCTCCAAC up 2 0


Secondary structure

GAAGCTCTTGATGGAGAAGCAGGGCACGTGCAGTTCACAAATTCTAATCTGCTCTGCACGTGCAGTTCACAAATTCTAATCTGCTCTGCACGTGCTCCCCTTCTCCAACATGGGTTC
----------ATGGAGAAGCAGGGCACGTGCA 	2
----------ATGGAGAAGCAGGGCACGTGC 	5
-----------TGGAGAAGCAGGGCACGTGCAGT 	1
-----------TGGAGAAGCAGGGCACGTGCAG 	2
-----------TGGAGAAGCAGGGCACGTGCA 	26425
-----------TGGAGAAGCAGGGCACGTGC 	206
-----------TGGAGAAGCAGGGCACGTG 	32
------------GGAGAAGCAGGGCACGTGCA 	149
------------GGAGAAGCAGGGCACGTGC 	3
-------------GAGAAGCAGGGCACGTGCAGTTC 	1
-------------GAGAAGCAGGGCACGTGCA 	7



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458930-2718 TGGAGAAGCAGGGCACGTGCA CACGTGCTCCCCTTCTCCAAC up 2 0


Secondary structure

TAGCTCCTTGTTGGAGAAGCAGGGCACGTGCAGATTTGCCTCACTTTTCCCCCTTTTTTCTTCTTTACTCCCACCACCGCCCACAGGCTTGCACGTGCTCCCCTTCTCCAACATGGGTTC
----------TTGGAGAAGCAGGGCACGTGC 	2
-----------TGGAGAAGCAGGGCACGTGCAGA 	1
-----------TGGAGAAGCAGGGCACGTGCAG 	7
-----------TGGAGAAGCAGGGCACGTGCA 	102725
-----------TGGAGAAGCAGGGCACGTGC 	779
-----------TGGAGAAGCAGGGCACGTG 	91
------------GGAGAAGCAGGGCACGTGCA 	313
------------GGAGAAGCAGGGCACGTGC 	2
-------------GAGAAGCAGGGCACGTGCA 	22



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Vitis vinifera GSM458930-2718 TGGAGAAGCAGGGCACGTGCA CATGTGCCCCTCTTCCCCATC up 5 0


Secondary structure

GTTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATGCACCACAAACCAATAATCTTTTGCTCGAGTTAGACTCTTGCTTGCTGCTTTGATTTTTTTTGTTAGCACCAGCGAGAGTTGGTTCTTCATGTGCCCCTCTTCCCCATCATGACCAC
----------ATGGAGAAGCAGGGCACGTGCA 	4
----------ATGGAGAAGCAGGGCACGTGC 	8
-----------TGGAGAAGCAGGGCACGTGCATT 	155
-----------TGGAGAAGCAGGGCACGTGCAT 	995
-----------TGGAGAAGCAGGGCACGTGCA 	102725
-----------TGGAGAAGCAGGGCACGTGC 	779
-----------TGGAGAAGCAGGGCACGTG 	91
------------GGAGAAGCAGGGCACGTGCAT 	13
------------GGAGAAGCAGGGCACGTGCA 	313
------------GGAGAAGCAGGGCACGTGC 	2
-------------GAGAAGCAGGGCACGTGCA 	22


Overlaps with: MNEST041581 MNEST054787
Overlaps with miRBase pre-miRNAs: vvi-MIR164c
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Vitis vinifera GSM458930-2718 TGGAGAAGCAGGGCACGTGCA CACGTGCTCCCCTTCTCCAAC up 2 0


Secondary structure

GAAGCTCTTGATGGAGAAGCAGGGCACGTGCAGTTCACAAATTCTAATCTGCTCTGCACGTGCAGTTCACAAATTCTAATCTGCTCTGCACGTGCTCCCCTTCTCCAACATGGGTTC
----------ATGGAGAAGCAGGGCACGTGCA 	4
----------ATGGAGAAGCAGGGCACGTGC 	8
-----------TGGAGAAGCAGGGCACGTGCAG 	7
-----------TGGAGAAGCAGGGCACGTGCA 	102725
-----------TGGAGAAGCAGGGCACGTGC 	779
-----------TGGAGAAGCAGGGCACGTG 	91
------------GGAGAAGCAGGGCACGTGCA 	313
------------GGAGAAGCAGGGCACGTGC 	2
-------------GAGAAGCAGGGCACGTGCA 	22



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Vitis vinifera GSM458929-2717 TGGAGAAGCAGGGCACGTGCA CACGTGCTCCCCTTCTCCAAC up 2 0


Secondary structure

TAGCTCCTTGTTGGAGAAGCAGGGCACGTGCAGATTTGCCTCACTTTTCCCCCTTTTTTCTTCTTTACTCCCACCACCGCCCACAGGCTTGCACGTGCTCCCCTTCTCCAACATGGGTTC
-----------TGGAGAAGCAGGGCACGTGCAG 	3
-----------TGGAGAAGCAGGGCACGTGCA 	60323
-----------TGGAGAAGCAGGGCACGTGC 	452
-----------TGGAGAAGCAGGGCACGTG 	39
------------GGAGAAGCAGGGCACGTGCAG 	1
------------GGAGAAGCAGGGCACGTGCA 	232
------------GGAGAAGCAGGGCACGTGC 	1
-------------GAGAAGCAGGGCACGTGCA 	14



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Vitis vinifera GSM458929-2717 TGGAGAAGCAGGGCACGTGCA CATGTGCCCCTCTTCCCCATC up 5 0


Secondary structure

GTTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATGCACCACAAACCAATAATCTTTTGCTCGAGTTAGACTCTTGCTTGCTGCTTTGATTTTTTTTGTTAGCACCAGCGAGAGTTGGTTCTTCATGTGCCCCTCTTCCCCATCATGACCAC
----------ATGGAGAAGCAGGGCACGTGCA 	3
----------ATGGAGAAGCAGGGCACGTGC 	11
----------ATGGAGAAGCAGGGCACGTG 	1
-----------TGGAGAAGCAGGGCACGTGCATT 	41
-----------TGGAGAAGCAGGGCACGTGCAT 	387
-----------TGGAGAAGCAGGGCACGTGCA 	60323
-----------TGGAGAAGCAGGGCACGTGC 	452
-----------TGGAGAAGCAGGGCACGTG 	39
------------GGAGAAGCAGGGCACGTGCAT 	20
------------GGAGAAGCAGGGCACGTGCA 	232
------------GGAGAAGCAGGGCACGTGC 	1
-------------GAGAAGCAGGGCACGTGCA 	14


Overlaps with: MNEST041581 MNEST054787
Overlaps with miRBase pre-miRNAs: vvi-MIR164c
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Vitis vinifera GSM458929-2717 TGGAGAAGCAGGGCACGTGCA CACGTGCTCCCCTTCTCCAAC up 2 0


Secondary structure

GAAGCTCTTGATGGAGAAGCAGGGCACGTGCAGTTCACAAATTCTAATCTGCTCTGCACGTGCAGTTCACAAATTCTAATCTGCTCTGCACGTGCTCCCCTTCTCCAACATGGGTTC
----------ATGGAGAAGCAGGGCACGTGCA 	3
----------ATGGAGAAGCAGGGCACGTGC 	11
----------ATGGAGAAGCAGGGCACGTG 	1
-----------TGGAGAAGCAGGGCACGTGCAG 	3
-----------TGGAGAAGCAGGGCACGTGCA 	60323
-----------TGGAGAAGCAGGGCACGTGC 	452
-----------TGGAGAAGCAGGGCACGTG 	39
------------GGAGAAGCAGGGCACGTGCAG 	1
------------GGAGAAGCAGGGCACGTGCA 	232
------------GGAGAAGCAGGGCACGTGC 	1
-------------GAGAAGCAGGGCACGTGCA 	14



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Vitis vinifera GSM458928-2716 TGGAGAAGCAGGGCACGTGCA CACGTGCTCCCCTTCTCCAAC up 2 0


Secondary structure

TAGCTCCTTGTTGGAGAAGCAGGGCACGTGCAGATTTGCCTCACTTTTCCCCCTTTTTTCTTCTTTACTCCCACCACCGCCCACAGGCTTGCACGTGCTCCCCTTCTCCAACATGGGTTC
----------TTGGAGAAGCAGGGCACGTGCA 	1
-----------TGGAGAAGCAGGGCACGTGCA 	4890
-----------TGGAGAAGCAGGGCACGTGC 	34
-----------TGGAGAAGCAGGGCACGTG 	8
------------GGAGAAGCAGGGCACGTGCA 	22



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Vitis vinifera GSM458928-2716 TGGAGAAGCAGGGCACGTGCA CATGTGCCCCTCTTCCCCATC up 5 0


Secondary structure

GTTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATGCACCACAAACCAATAATCTTTTGCTCGAGTTAGACTCTTGCTTGCTGCTTTGATTTTTTTTGTTAGCACCAGCGAGAGTTGGTTCTTCATGTGCCCCTCTTCCCCATCATGACCAC
----------ATGGAGAAGCAGGGCACGTGC 	2
-----------TGGAGAAGCAGGGCACGTGCATT 	10
-----------TGGAGAAGCAGGGCACGTGCAT 	42
-----------TGGAGAAGCAGGGCACGTGCA 	4890
-----------TGGAGAAGCAGGGCACGTGC 	34
-----------TGGAGAAGCAGGGCACGTG 	8
------------GGAGAAGCAGGGCACGTGCATT 	1
------------GGAGAAGCAGGGCACGTGCA 	22


Overlaps with: MNEST041581 MNEST054787
Overlaps with miRBase pre-miRNAs: vvi-MIR164c
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Vitis vinifera GSM458928-2716 TGGAGAAGCAGGGCACGTGCA CACGTGCTCCCCTTCTCCAAC up 2 0


Secondary structure

GAAGCTCTTGATGGAGAAGCAGGGCACGTGCAGTTCACAAATTCTAATCTGCTCTGCACGTGCAGTTCACAAATTCTAATCTGCTCTGCACGTGCTCCCCTTCTCCAACATGGGTTC
----------ATGGAGAAGCAGGGCACGTGC 	2
-----------TGGAGAAGCAGGGCACGTGCA 	4890
-----------TGGAGAAGCAGGGCACGTGC 	34
-----------TGGAGAAGCAGGGCACGTG 	8
------------GGAGAAGCAGGGCACGTGCA 	22



HuntMi prediction: true miRNA