miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGAGAAGCAGGGCACGTGCG

selected species: Arabidopsis thaliana



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TGGAGAAGCAGGGCACGTGCG CACGTGTTCTACTACTCCAAC up 2 0


Secondary structure

GTAACACTTGATGGAGAAGCAGGGCACGTGCGAACACAAATGAAATCGATCGGTACTTGTTGATCATATTTTCGCACGTGTTCTACTACTCCAACACGTGTCT
----------ATGGAGAAGCAGGGCACGTGC 	1
-----------TGGAGAAGCAGGGCACGTGCGA 	6
-----------TGGAGAAGCAGGGCACGTGCG 	706
-----------TGGAGAAGCAGGGCACGTGC 	30
-----------TGGAGAAGCAGGGCACGTG 	13
------------GGAGAAGCAGGGCACGTGCG 	3
--------------------------------------------------------------------------CACGTGTTCTACTACTCCAAC 	1
----------------------------------------------------------------------------CGTGTTCTACTACTCCAACA 	1


Overlaps with: MNEST040029 MNEST046942
Overlaps with miRBase pre-miRNAs: ath-MIR164c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM424847-4989 TGGAGAAGCAGGGCACGTGCG CACGTGTTCTACTACTCCAAC up 2 0


Secondary structure

GTAACACTTGATGGAGAAGCAGGGCACGTGCGAACACAAATGAAATCGATCGGTACTTGTTGATCATATTTTCGCACGTGTTCTACTACTCCAACACGTGTCT
-----------TGGAGAAGCAGGGCACGTGCGAA 	5
-----------TGGAGAAGCAGGGCACGTGCGA 	1
-----------TGGAGAAGCAGGGCACGTGCG 	452
-----------TGGAGAAGCAGGGCACGTGC 	6
-----------TGGAGAAGCAGGGCACGTG 	7


Overlaps with: MNEST040029 MNEST046942
Overlaps with miRBase pre-miRNAs: ath-MIR164c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM415785 TGGAGAAGCAGGGCACGTGCG CACGTGTTCTACTACTCCAAC up 2 0


Secondary structure

GTAACACTTGATGGAGAAGCAGGGCACGTGCGAACACAAATGAAATCGATCGGTACTTGTTGATCATATTTTCGCACGTGTTCTACTACTCCAACACGTGTCT
-----------TGGAGAAGCAGGGCACGTGCG 	17
-----------TGGAGAAGCAGGGCACGTGC 	6
-----------TGGAGAAGCAGGGCACGTG 	3
--------------------------------------------------------------------------CACGTGTTCTACTACTCCAAC 	1


Overlaps with: MNEST040029 MNEST046942
Overlaps with miRBase pre-miRNAs: ath-MIR164c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM424848-4990 TGGAGAAGCAGGGCACGTGCG CACGTGTTCTACTACTCCAAC up 2 0


Secondary structure

GTAACACTTGATGGAGAAGCAGGGCACGTGCGAACACAAATGAAATCGATCGGTACTTGTTGATCATATTTTCGCACGTGTTCTACTACTCCAACACGTGTCT
----------ATGGAGAAGCAGGGCACGTGC 	2
-----------TGGAGAAGCAGGGCACGTGCGAAC 	2
-----------TGGAGAAGCAGGGCACGTGCGAA 	2
-----------TGGAGAAGCAGGGCACGTGCGA 	1
-----------TGGAGAAGCAGGGCACGTGCG 	550
-----------TGGAGAAGCAGGGCACGTGC 	10
-----------TGGAGAAGCAGGGCACGTG 	5
--------------------------------------------------------------------------CACGTGTTCTACTACTCCAAC 	1


Overlaps with: MNEST040029 MNEST046942
Overlaps with miRBase pre-miRNAs: ath-MIR164c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM277608 TGGAGAAGCAGGGCACGTGCG CACGTGTTCTACTACTCCAAC up 2 0


Secondary structure

GTAACACTTGATGGAGAAGCAGGGCACGTGCGAACACAAATGAAATCGATCGGTACTTGTTGATCATATTTTCGCACGTGTTCTACTACTCCAACACGTGTCT
-----------TGGAGAAGCAGGGCACGTGCGA 	1
-----------TGGAGAAGCAGGGCACGTGCG 	141
-----------TGGAGAAGCAGGGCACGTGC 	4
-----------TGGAGAAGCAGGGCACGTG 	4


Overlaps with: MNEST040029 MNEST046942
Overlaps with miRBase pre-miRNAs: ath-MIR164c
HuntMi prediction: true miRNA