miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGAGAAGCAGGGCACGTGCT

selected species: Oryza sativa



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
------------------TGCTGGAGAAGCAGGGCACGT 	9
---------------------TGGAGAAGCAGGGCACGTGCT 	13
---------------------TGGAGAAGCAGGGCACGTG 	3
---------------------TGGAGAAGCAGGGCACGTGC 	3
----------------------GGAGAAGCAGGGCACGTGCT 	1


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520638-18676 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
------------------TGCTGGAGAAGCAGGGCACGT 	5
---------------------TGGAGAAGCAGGGCACGTGCT 	60
---------------------TGGAGAAGCAGGGCACGTGC 	9
---------------------TGGAGAAGCAGGGCACGTG 	12


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM686040-31373 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
------------------TGCTGGAGAAGCAGGGCACGT 	4
---------------------TGGAGAAGCAGGGCACGTGCT 	81
---------------------TGGAGAAGCAGGGCACGTGC 	31
---------------------TGGAGAAGCAGGGCACGTG 	15


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520640-18679 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
------------------TGCTGGAGAAGCAGGGCACGT 	5
------------------TGCTGGAGAAGCAGGGCACGTG 	3
------------------TGCTGGAGAAGCAGGGCACGTGCT 	1
---------------------TGGAGAAGCAGGGCACGTGCT 	59
---------------------TGGAGAAGCAGGGCACGTGC 	6
---------------------TGGAGAAGCAGGGCACGTG 	2


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM686039-31370 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
------------------TGCTGGAGAAGCAGGGCACGT 	4
------------------TGCTGGAGAAGCAGGGCACG 	1
---------------------TGGAGAAGCAGGGCACGTGCT 	59
---------------------TGGAGAAGCAGGGCACGTGC 	28
---------------------TGGAGAAGCAGGGCACGTG 	8
----------------------GGAGAAGCAGGGCACGTGCT 	2
----------------------GGAGAAGCAGGGCACGTGC 	1


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520634-18667 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
---------------------TGGAGAAGCAGGGCACGTGCT 	7


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM520636-18672 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
------------------TGCTGGAGAAGCAGGGCACGTGCT 	1
---------------------TGGAGAAGCAGGGCACGTGCT 	19


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520635-18669 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
-----------------GTGCTGGAGAAGCAGGGCACGTGC 	1
------------------TGCTGGAGAAGCAGGGCACGTGCT 	2
---------------------TGGAGAAGCAGGGCACGTGCT 	18
---------------------TGGAGAAGCAGGGCACGTGC 	1
---------------------TGGAGAAGCAGGGCACGTG 	1
----------------------------------------------------------------------------CATGTGCGCTCCTTCTCCAGCATG 	1


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520639-18678 TGGAGAAGCAGGGCACGTGCT CATGTGCGCTCCTTCTCCAGC up 2 0


Secondary structure

GGAGGGGTGAGCAAACCGTGCTGGAGAAGCAGGGCACGTGCTCGACGGCGGGGCTGGCTGGCCGGCCGGCTTGCAGCATGTGCGCTCCTTCTCCAGCATGGCTTCTCGCCCCGTC
------------------TGCTGGAGAAGCAGGGCACGT 	2
---------------------TGGAGAAGCAGGGCACGTGCT 	33
---------------------TGGAGAAGCAGGGCACGTG 	1
---------------------TGGAGAAGCAGGGCACGTGC 	1


Overlaps with: MNEST041934 MNEST048841
Overlaps with miRBase pre-miRNAs: osa-MIR164d
HuntMi prediction: true miRNA