miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAGAAGCAGGGTACGTGCA

selected species: Oryza sativa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM520638-18676 TGGAGAAGCAGGGTACGTGCA CACGTGCTCCCCTTCTCCACC up 2 0


Secondary structure

GCTATCGATCTACAGGTGAGTAGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGGTGATCGAATGCACGTGCTCCCCTTCTCCACCATGGCCTTCTCACCTTCTTCATCTTCAC
-------------------------------TGGAGAAGCAGGGTACGTGCA 	17

Overlaps with: MNEST041933 MNEST048840
Overlaps with miRBase pre-miRNAs: osa-MIR164c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM686040-31373 TGGAGAAGCAGGGTACGTGCA CACGTGCTCCCCTTCTCCACC up 2 0


Secondary structure

GCTATCGATCTACAGGTGAGTAGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGGTGATCGAATGCACGTGCTCCCCTTCTCCACCATGGCCTTCTCACCTTCTTCATCTTCAC
-------------------------------TGGAGAAGCAGGGTACGTGCA 	123
-------------------------------TGGAGAAGCAGGGTACGTGC 	1
--------------------------------GGAGAAGCAGGGTACGTGCA 	2

Overlaps with: MNEST041933 MNEST048840
Overlaps with miRBase pre-miRNAs: osa-MIR164c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520640-18679 TGGAGAAGCAGGGTACGTGCA CACGTGCTCCCCTTCTCCACC up 2 0


Secondary structure

GCTATCGATCTACAGGTGAGTAGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGGTGATCGAATGCACGTGCTCCCCTTCTCCACCATGGCCTTCTCACCTTCTTCATCTTCAC
-------------------------------TGGAGAAGCAGGGTACGTGCA 	17

Overlaps with: MNEST041933 MNEST048840
Overlaps with miRBase pre-miRNAs: osa-MIR164c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM686039-31370 TGGAGAAGCAGGGTACGTGCA CACGTGCTCCCCTTCTCCACC up 2 0


Secondary structure

GCTATCGATCTACAGGTGAGTAGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGGTGATCGAATGCACGTGCTCCCCTTCTCCACCATGGCCTTCTCACCTTCTTCATCTTCAC
-------------------------------TGGAGAAGCAGGGTACGTGCA 	20

Overlaps with: MNEST041933 MNEST048840
Overlaps with miRBase pre-miRNAs: osa-MIR164c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520639-18678 TGGAGAAGCAGGGTACGTGCA CACGTGCTCCCCTTCTCCACC up 2 0


Secondary structure

GCTATCGATCTACAGGTGAGTAGGTTCTTGTTGGAGAAGCAGGGTACGTGCAAAATGCACACCGGTTGGTCGAGCTAATTAACAAGCTCTGACGACCATGGTGATCGAATGCACGTGCTCCCCTTCTCCACCATGGCCTTCTCACCTTCTTCATCTTCAC
-------------------------------TGGAGAAGCAGGGTACGTGCA 	6
-------------------------------TGGAGAAGCAGGGTACGTG 	1

Overlaps with: MNEST041933 MNEST048840
Overlaps with miRBase pre-miRNAs: osa-MIR164c
HuntMi prediction: true miRNA