miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGAGTGTGACAATGGTGTTTG

selected species: Homo sapiens



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM531974 TGGAGTGTGACAATGGTGTTTG AACGCCATTATCACACTAAATA up 3 0


Secondary structure

AGAGTTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCTAAACTATCAAACGCCATTATCACACTAAATAGCTACTGCTAGGCAATCC
----------------AGCTGTGGAGTGTGACAATGGT 	1
------------------CTGTGGAGTGTGACAATGGTGTT 	2
-------------------TGTGGAGTGTGACAATGGTGTT 	255
-------------------TGTGGAGTGTGACAATGGTGT 	10
-------------------TGTGGAGTGTGACAATGGTGTTT 	6
-------------------TGTGGAGTGTGACAATGGTG 	1
--------------------GTGGAGTGTGACAATGGTGTTTG 	17
--------------------GTGGAGTGTGACAATGGTGTTT 	71
--------------------GTGGAGTGTGACAATGGTGTT 	8
--------------------GTGGAGTGTGACAATGGTGT 	8
--------------------GTGGAGTGTGACAATGGTG 	3
--------------------GTGGAGTGTGACAATGGTGTTTGT 	1
---------------------TGGAGTGTGACAATGGTGTTTGTGT 	390
---------------------TGGAGTGTGACAATGGTGTTTGTG 	417
---------------------TGGAGTGTGACAATGGTGTTTGT 	379104
---------------------TGGAGTGTGACAATGGTGTTTG 	1916497
---------------------TGGAGTGTGACAATGGTGTTT 	273640
---------------------TGGAGTGTGACAATGGTGTT 	109412
---------------------TGGAGTGTGACAATGGTGT 	34450
---------------------TGGAGTGTGACAATGGTGTTTGTGTC 	3
----------------------GGAGTGTGACAATGGTGTTTGT 	850
----------------------GGAGTGTGACAATGGTGTTTG 	10022
----------------------GGAGTGTGACAATGGTGTTT 	670
----------------------GGAGTGTGACAATGGTGTT 	455
----------------------GGAGTGTGACAATGGTGTTTGTG 	2
-----------------------GAGTGTGACAATGGTGTTTGT 	453
-----------------------GAGTGTGACAATGGTGTTTG 	1715
-----------------------GAGTGTGACAATGGTGTTT 	357
------------------------AGTGTGACAATGGTGTTTG 	32
------------------------AGTGTGACAATGGTGTTTGT 	6
-------------------------GTGTGACAATGGTGTTTGT 	1
--------------------------TGTGACAATGGTGTTTGTGT 	3
--------------------------------------------------------AAACGCCATTATCACACTAAAT 	9
--------------------------------------------------------AAACGCCATTATCACACTAA 	2
--------------------------------------------------------AAACGCCATTATCACACTAAATA 	1
---------------------------------------------------------AACGCCATTATCACACTAAATA 	31
---------------------------------------------------------AACGCCATTATCACACTAAAT 	74
---------------------------------------------------------AACGCCATTATCACACTAAA 	9
---------------------------------------------------------AACGCCATTATCACACTAA 	9
----------------------------------------------------------ACGCCATTATCACACTAAAT 	1


Overlaps with: MNEST028426 MNEST030814
Overlaps with miRBase pre-miRNAs: hsa-mir-3591 ppy-mir-122 hsa-mir-122
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM531982 TGGAGTGTGACAATGGTGTTTG AACGCCATTATCACACTAAATA up 3 0


Secondary structure

AGAGTTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCTAAACTATCAAACGCCATTATCACACTAAATAGCTACTGCTAGGCAATCC
----------------AGCTGTGGAGTGTGACAATGGTGT 	1
-------------------TGTGGAGTGTGACAATGGTGTTT 	16
-------------------TGTGGAGTGTGACAATGGTGTT 	2212
-------------------TGTGGAGTGTGACAATGGTGT 	238
-------------------TGTGGAGTGTGACAATGGTG 	15
-------------------TGTGGAGTGTGACAATGGT 	5
--------------------GTGGAGTGTGACAATGGTGTTTG 	44
--------------------GTGGAGTGTGACAATGGTGTTT 	245
--------------------GTGGAGTGTGACAATGGTGTT 	85
--------------------GTGGAGTGTGACAATGGTGT 	45
--------------------GTGGAGTGTGACAATGGTGTTTGT 	3
--------------------GTGGAGTGTGACAATGGTG 	3
---------------------TGGAGTGTGACAATGGTGTTTGTGT 	56
---------------------TGGAGTGTGACAATGGTGTTTGTG 	94
---------------------TGGAGTGTGACAATGGTGTTTGT 	161746
---------------------TGGAGTGTGACAATGGTGTTTG 	2589502
---------------------TGGAGTGTGACAATGGTGTTT 	342764
---------------------TGGAGTGTGACAATGGTGTT 	137636
---------------------TGGAGTGTGACAATGGTGT 	51899
---------------------TGGAGTGTGACAATGGTGTTTGTGTC 	1
----------------------GGAGTGTGACAATGGTGTTTGT 	443
----------------------GGAGTGTGACAATGGTGTTTG 	20885
----------------------GGAGTGTGACAATGGTGTTT 	1082
----------------------GGAGTGTGACAATGGTGTT 	772
-----------------------GAGTGTGACAATGGTGTTTGT 	426
-----------------------GAGTGTGACAATGGTGTTTG 	4167
-----------------------GAGTGTGACAATGGTGTTT 	778
-----------------------GAGTGTGACAATGGTGTTTGTG 	3
------------------------AGTGTGACAATGGTGTTTGT 	8
------------------------AGTGTGACAATGGTGTTTG 	164
------------------------AGTGTGACAATGGTGTTTGTG 	3
-------------------------GTGTGACAATGGTGTTTGTG 	3
-------------------------GTGTGACAATGGTGTTTGT 	1
--------------------------TGTGACAATGGTGTTTGTG 	2
--------------------------TGTGACAATGGTGTTTGTGTCT 	1
-------------------------------------------------AACTATCAAACGCCATTATCA 	3
------------------------------------------------------TCAAACGCCATTATCACACTAA 	2
------------------------------------------------------TCAAACGCCATTATCACACTA 	1
--------------------------------------------------------AAACGCCATTATCACACTAAAT 	68
--------------------------------------------------------AAACGCCATTATCACACTAAA 	14
--------------------------------------------------------AAACGCCATTATCACACTAA 	11
--------------------------------------------------------AAACGCCATTATCACACTA 	8
---------------------------------------------------------AACGCCATTATCACACTAAATA 	176
---------------------------------------------------------AACGCCATTATCACACTAAAT 	533
---------------------------------------------------------AACGCCATTATCACACTAAA 	39
---------------------------------------------------------AACGCCATTATCACACTAA 	36
----------------------------------------------------------ACGCCATTATCACACTAAAT 	4


Overlaps with: MNEST028426 MNEST030814
Overlaps with miRBase pre-miRNAs: hsa-mir-3591 ppy-mir-122 hsa-mir-122
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM531978 TGGAGTGTGACAATGGTGTTTG AACGCCATTATCACACTAAATA up 3 0


Secondary structure

AGAGTTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCTAAACTATCAAACGCCATTATCACACTAAATAGCTACTGCTAGGCAATCC
------------------CTGTGGAGTGTGACAATGGTGTT 	6
-------------------TGTGGAGTGTGACAATGGTGTTT 	11
-------------------TGTGGAGTGTGACAATGGTGTT 	292
-------------------TGTGGAGTGTGACAATGGTGT 	20
-------------------TGTGGAGTGTGACAATGGTG 	4
--------------------GTGGAGTGTGACAATGGTGTTTG 	12
--------------------GTGGAGTGTGACAATGGTGTTT 	88
--------------------GTGGAGTGTGACAATGGTGTT 	24
--------------------GTGGAGTGTGACAATGGTGT 	8
--------------------GTGGAGTGTGACAATGGTGTTTGT 	1
---------------------TGGAGTGTGACAATGGTGTTTGTGTC 	11
---------------------TGGAGTGTGACAATGGTGTTTGTGT 	225
---------------------TGGAGTGTGACAATGGTGTTTGTG 	258
---------------------TGGAGTGTGACAATGGTGTTTGT 	93867
---------------------TGGAGTGTGACAATGGTGTTTG 	1345206
---------------------TGGAGTGTGACAATGGTGTTT 	319966
---------------------TGGAGTGTGACAATGGTGTT 	482123
---------------------TGGAGTGTGACAATGGTGT 	75851
----------------------GGAGTGTGACAATGGTGTTTGTGT 	11
----------------------GGAGTGTGACAATGGTGTTTGT 	231
----------------------GGAGTGTGACAATGGTGTTTG 	7082
----------------------GGAGTGTGACAATGGTGTTT 	732
----------------------GGAGTGTGACAATGGTGTT 	1770
----------------------GGAGTGTGACAATGGTGTTTGTG 	8
-----------------------GAGTGTGACAATGGTGTTTGT 	121
-----------------------GAGTGTGACAATGGTGTTTG 	1009
-----------------------GAGTGTGACAATGGTGTTT 	381
-----------------------GAGTGTGACAATGGTGTTTGTG 	1
------------------------AGTGTGACAATGGTGTTTG 	20
------------------------AGTGTGACAATGGTGTTTGT 	2
-------------------------GTGTGACAATGGTGTTTGTG 	1
--------------------------TGTGACAATGGTGTTTGTGTCT 	3
--------------------------TGTGACAATGGTGTTTGTG 	3
--------------------------TGTGACAATGGTGTTTGTGT 	2
--------------------------TGTGACAATGGTGTTTGTGTCTAA 	2
-------------------------------------------------------CAAACGCCATTATCACACTAAA 	3
--------------------------------------------------------AAACGCCATTATCACACTAAAT 	19
--------------------------------------------------------AAACGCCATTATCACACTAA 	7
--------------------------------------------------------AAACGCCATTATCACACTA 	4
--------------------------------------------------------AAACGCCATTATCACACTAAA 	2
---------------------------------------------------------AACGCCATTATCACACTAAAT 	47
---------------------------------------------------------AACGCCATTATCACACTAA 	14
---------------------------------------------------------AACGCCATTATCACACTAAA 	6


Overlaps with: MNEST028426 MNEST030814
Overlaps with miRBase pre-miRNAs: hsa-mir-3591 ppy-mir-122 hsa-mir-122
HuntMi prediction: true miRNA