miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGGAGTGTGACAATGGTGTTTG

selected species: Mus musculus

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Mus musculus	GSM539849	TGGAGTGTGACAATGGTGTTTG	AACGCCATTATCACACTAAATA	up	3	0

Secondary structure

AGACTTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCAAACCATCAAACGCCATTATCACACTAAATAGCTACTGCTAGGCAATCC
---------------------TGGAGTGTGACAATGGTGTTTGT 	17
---------------------TGGAGTGTGACAATGGTGTTTG 	44
---------------------TGGAGTGTGACAATGGTGTTT 	13
---------------------TGGAGTGTGACAATGGTGTT 	2
---------------------TGGAGTGTGACAATGGTGT 	1

Overlaps with: MNEST031837
Overlaps with miRBase pre-miRNAs: mmu-mir-122
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Mus musculus	GSM539861	TGGAGTGTGACAATGGTGTTTG	AACGCCATTATCACACTAAATA	up	3	0

Secondary structure

AGACTTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCAAACCATCAAACGCCATTATCACACTAAATAGCTACTGCTAGGCAATCC
---------------------TGGAGTGTGACAATGGTGTTTGT 	1
---------------------TGGAGTGTGACAATGGTGTTTG 	16
---------------------TGGAGTGTGACAATGGTGTTT 	3
---------------------TGGAGTGTGACAATGGTGTT 	1
----------------------GGAGTGTGACAATGGTGTTTG 	1

Overlaps with: MNEST031837
Overlaps with miRBase pre-miRNAs: mmu-mir-122
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Mus musculus	GSM539878	TGGAGTGTGACAATGGTGTTTG	AACGCCATTATCACACTAAATA	up	3	0

Secondary structure

AGACTTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCAAACCATCAAACGCCATTATCACACTAAATAGCTACTGCTAGGCAATCC
---------------------TGGAGTGTGACAATGGTGTTTGT 	5
---------------------TGGAGTGTGACAATGGTGTTTG 	10
---------------------TGGAGTGTGACAATGGTGTTT 	2
---------------------TGGAGTGTGACAATGGTGTT 	1

Overlaps with: MNEST031837
Overlaps with miRBase pre-miRNAs: mmu-mir-122
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Mus musculus	GSM539873	TGGAGTGTGACAATGGTGTTTG	AACGCCATTATCACACTAAATA	up	3	0

Secondary structure

AGACTTTCCTTAGCAGAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCAAACCATCAAACGCCATTATCACACTAAATAGCTACTGCTAGGCAATCC
---------------------TGGAGTGTGACAATGGTGTTTGT 	7
---------------------TGGAGTGTGACAATGGTGTTTG 	55
---------------------TGGAGTGTGACAATGGTGTTT 	20
---------------------TGGAGTGTGACAATGGTGTT 	5
---------------------TGGAGTGTGACAATGGTGTTTGTGT 	2
----------------------GGAGTGTGACAATGGTGTTTG 	1

Overlaps with: MNEST031837
Overlaps with miRBase pre-miRNAs: mmu-mir-122
HuntMi prediction: true miRNA