miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGCAAGAAATGGCAGTCTACA

selected species: Caenorhabditis elegans



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGGCAAGAAATGGCAGTCTACA CGGGCTTCCATCTCTTTCCCAGC down 5 1


Secondary structure

AGACTACAAAGCAAAATGGTTCAAAAAACGTTCGGGCTTCCATCTCTTTCCCAGCCTACATCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTTTTCAACCAAATGCTATGGCCTTTT
--------------------------------CGGGCTTCCATCTCTTTCCCAGC 	12
--------------------------------CGGGCTTCCATCTCTTTCCCAG 	1
------------------------------------------------------------------------CTGGCAAGAAATGGCAGTCTACA 	3
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA 	826
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAC 	9
--------------------------------------------------------------------------GGCAAGAAATGGCAGTCTACA 	1

Overlaps with: MNEST038310
Overlaps with miRBase pre-miRNAs: cel-mir-74
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TGGCAAGAAATGGCAGTCTACA CGGGCTTCCATCTCTTTCCCAGC down 5 1


Secondary structure

AGACTACAAAGCAAAATGGTTCAAAAAACGTTCGGGCTTCCATCTCTTTCCCAGCCTACATCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTTTTCAACCAAATGCTATGGCCTTTT
--------------------------------CGGGCTTCCATCTCTTTCCCAGC 	9
--------------------------------CGGGCTTCCATCTCTTTCCCAGCC 	1
------------------------------------------------------------------------CTGGCAAGAAATGGCAGTCTACA 	2
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA 	274
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAC 	6
--------------------------------------------------------------------------GGCAAGAAATGGCAGTCTACA 	1
--------------------------------------------------------------------------GGCAAGAAATGGCAGTCTAC 	1
---------------------------------------------------------------------------GCAAGAAATGGCAGTCTACA 	1

Overlaps with: MNEST038310
Overlaps with miRBase pre-miRNAs: cel-mir-74
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TGGCAAGAAATGGCAGTCTACA CGGGCTTCCATCTCTTTCCCAGC down 5 1


Secondary structure

AGACTACAAAGCAAAATGGTTCAAAAAACGTTCGGGCTTCCATCTCTTTCCCAGCCTACATCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTTTTCAACCAAATGCTATGGCCTTTT
--------------------------------CGGGCTTCCATCTCTTTCCCAGC 	13
--------------------------------CGGGCTTCCATCTCTTTCCCAG 	1
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACAC 	3
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA 	686
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAC 	27
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTA 	2

Overlaps with: MNEST038310
Overlaps with miRBase pre-miRNAs: cel-mir-74
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 TGGCAAGAAATGGCAGTCTACA CGGGCTTCCATCTCTTTCCCAGC down 5 1


Secondary structure

AGACTACAAAGCAAAATGGTTCAAAAAACGTTCGGGCTTCCATCTCTTTCCCAGCCTACATCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTTTTCAACCAAATGCTATGGCCTTTT
--------------------------------CGGGCTTCCATCTCTTTCCCAGC 	4
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA 	81
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAC 	1

Overlaps with: MNEST038310
Overlaps with miRBase pre-miRNAs: cel-mir-74
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427297-5679 TGGCAAGAAATGGCAGTCTACA CGGGCTTCCATCTCTTTCCCAGC down 5 1


Secondary structure

AGACTACAAAGCAAAATGGTTCAAAAAACGTTCGGGCTTCCATCTCTTTCCCAGCCTACATCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTTTTCAACCAAATGCTATGGCCTTTT
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA 	27
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAC 	1

Overlaps with: MNEST038310
Overlaps with miRBase pre-miRNAs: cel-mir-74
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297751-9445 TGGCAAGAAATGGCAGTCTACA CGGGCTTCCATCTCTTTCCCAGC down 5 1


Secondary structure

AGACTACAAAGCAAAATGGTTCAAAAAACGTTCGGGCTTCCATCTCTTTCCCAGCCTACATCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTTTTCAACCAAATGCTATGGCCTTTT
--------------------------------CGGGCTTCCATCTCTTTCCCAGC 	1
------------------------------------------------------------------------CTGGCAAGAAATGGCAGTCTACA 	4
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCT 	1
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA 	4159
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAC 	102
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTA 	4
--------------------------------------------------------------------------GGCAAGAAATGGCAGTCTACA 	1
---------------------------------------------------------------------------GCAAGAAATGGCAGTCTACA 	1
----------------------------------------------------------------------------CAAGAAATGGCAGTCTACA 	2

Overlaps with: MNEST038310
Overlaps with miRBase pre-miRNAs: cel-mir-74
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297752-9446 TGGCAAGAAATGGCAGTCTACA CGGGCTTCCATCTCTTTCCCAGC down 5 1


Secondary structure

AGACTACAAAGCAAAATGGTTCAAAAAACGTTCGGGCTTCCATCTCTTTCCCAGCCTACATCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTTTTCAACCAAATGCTATGGCCTTTT
--------------------------------CGGGCTTCCATCTCTTTCCCAGC 	1
------------------------------------------------------------------------CTGGCAAGAAATGGCAGTCTACA 	4
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCT 	1
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA 	4932
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAC 	148
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTA 	2
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACAC 	1
--------------------------------------------------------------------------GGCAAGAAATGGCAGTCTAC 	1
--------------------------------------------------------------------------GGCAAGAAATGGCAGTCTACA 	10
---------------------------------------------------------------------------GCAAGAAATGGCAGTCTACA 	1
----------------------------------------------------------------------------CAAGAAATGGCAGTCTACA 	11

Overlaps with: MNEST038310
Overlaps with miRBase pre-miRNAs: cel-mir-74
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM427301-5681 TGGCAAGAAATGGCAGTCTACA CGGGCTTCCATCTCTTTCCCAGC down 5 1


Secondary structure

AGACTACAAAGCAAAATGGTTCAAAAAACGTTCGGGCTTCCATCTCTTTCCCAGCCTACATCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTTTTCAACCAAATGCTATGGCCTTTT
-------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTACA 	20

Overlaps with: MNEST038310
Overlaps with miRBase pre-miRNAs: cel-mir-74
HuntMi prediction: true miRNA