miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGCAGTGTATTGTTAGCTGGT

selected species: Mus musculus



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539877-5198 TGGCAGTGTATTGTTAGCTGGT CAGCTAACATGCGACTGCTCTC up 1 2


Secondary structure

TCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGCTGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTGCACACACAATCA
---------------------TGGCAGTGTATTGTTAGCTGGTT 	74
---------------------TGGCAGTGTATTGTTAGCTGGT 	334
---------------------TGGCAGTGTATTGTTAGCTGG 	19
---------------------TGGCAGTGTATTGTTAGCT 	74
---------------------TGGCAGTGTATTGTTAGCTG 	46
-------------------------------------------------------------CAGCTAACATGCGACTGCTCTC 	1

Overlaps with: MNEST032077
Overlaps with miRBase pre-miRNAs: mmu-mir-449a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539835 TGGCAGTGTATTGTTAGCTGGT CAGCTAACATGCGACTGCTCTC up 1 2


Secondary structure

TCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGCTGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTGCACACACAATCA
---------------------TGGCAGTGTATTGTTAGCTGGT 	10
---------------------TGGCAGTGTATTGTTAGCTGGTT 	1
---------------------TGGCAGTGTATTGTTAGCT 	1
---------------------TGGCAGTGTATTGTTAGCTGG 	1
-------------------------------------------------------------CAGCTAACATGCGACTGCTCTC 	1

Overlaps with: MNEST032077
Overlaps with miRBase pre-miRNAs: mmu-mir-449a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539855 TGGCAGTGTATTGTTAGCTGGT CAGCTAACATGCGACTGCTCTC up 1 2


Secondary structure

TCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGCTGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTGCACACACAATCA
---------------------TGGCAGTGTATTGTTAGCTGGTT 	11
---------------------TGGCAGTGTATTGTTAGCTGGT 	51
---------------------TGGCAGTGTATTGTTAGCTGG 	5
---------------------TGGCAGTGTATTGTTAGCT 	7
---------------------TGGCAGTGTATTGTTAGCTG 	1

Overlaps with: MNEST032077
Overlaps with miRBase pre-miRNAs: mmu-mir-449a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539869 TGGCAGTGTATTGTTAGCTGGT CAGCTAACATGCGACTGCTCTC up 1 2


Secondary structure

TCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGCTGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTGCACACACAATCA
---------------------TGGCAGTGTATTGTTAGCTGGT 	13
---------------------TGGCAGTGTATTGTTAGCTGG 	4
---------------------TGGCAGTGTATTGTTAGCTG 	4
---------------------TGGCAGTGTATTGTTAGCT 	5

Overlaps with: MNEST032077
Overlaps with miRBase pre-miRNAs: mmu-mir-449a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539848 TGGCAGTGTATTGTTAGCTGGT CAGCTAACATGCGACTGCTCTC up 1 2


Secondary structure

TCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGCTGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTGCACACACAATCA
---------------------TGGCAGTGTATTGTTAGCTGGT 	7
---------------------TGGCAGTGTATTGTTAGCT 	3
---------------------TGGCAGTGTATTGTTAGCTGGTT 	1

Overlaps with: MNEST032077
Overlaps with miRBase pre-miRNAs: mmu-mir-449a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539853 TGGCAGTGTATTGTTAGCTGGT CAGCTAACATGCGACTGCTCTC up 1 2


Secondary structure

TCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGCTGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTGCACACACAATCA
---------------------TGGCAGTGTATTGTTAGCTGGTT 	1
---------------------TGGCAGTGTATTGTTAGCTGGT 	7
---------------------TGGCAGTGTATTGTTAGCTG 	1
---------------------TGGCAGTGTATTGTTAGCT 	1

Overlaps with: MNEST032077
Overlaps with miRBase pre-miRNAs: mmu-mir-449a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539878 TGGCAGTGTATTGTTAGCTGGT CAGCTAACATGCGACTGCTCTC up 1 2


Secondary structure

TCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGCTGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTGCACACACAATCA
---------------------TGGCAGTGTATTGTTAGCTGGTT 	9
---------------------TGGCAGTGTATTGTTAGCTGGT 	30
---------------------TGGCAGTGTATTGTTAGCTGG 	2
---------------------TGGCAGTGTATTGTTAGCT 	11
---------------------TGGCAGTGTATTGTTAGCTG 	7
-------------------------------------------------------------CAGCTAACATGCGACTGCTCTC 	1

Overlaps with: MNEST032077
Overlaps with miRBase pre-miRNAs: mmu-mir-449a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539873 TGGCAGTGTATTGTTAGCTGGT CAGCTAACATGCGACTGCTCTC up 1 2


Secondary structure

TCTTGCCTGTGTGTGATGGCTTGGCAGTGTATTGTTAGCTGGTTGAGTATGTGAGCGGCACCAGCTAACATGCGACTGCTCTCCTATTGCACACACAATCA
---------------------TGGCAGTGTATTGTTAGCTGGT 	19
---------------------TGGCAGTGTATTGTTAGCTGG 	1
---------------------TGGCAGTGTATTGTTAGCT 	5
---------------------TGGCAGTGTATTGTTAGCTGGTT 	3
---------------------TGGCAGTGTATTGTTAGCTG 	5

Overlaps with: MNEST032077
Overlaps with miRBase pre-miRNAs: mmu-mir-449a
HuntMi prediction: true miRNA