miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGCAGTGTCTTAGCTGGTTGT

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540642 TGGCAGTGTCTTAGCTGGTTGT AATCAGCAAGTATACTGCCGCA up 0 2


Secondary structure

GAGTGGTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGTGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAACTCG
-----------TGGCAGTGTCTTAGCTGGTTGTTGTG 	1
-----------TGGCAGTGTCTTAGCTGGTTGTTGT 	5
-----------TGGCAGTGTCTTAGCTGGTTGTTG 	2
-----------TGGCAGTGTCTTAGCTGGTTGTT 	5
-----------TGGCAGTGTCTTAGCTGGTTGT 	54
-----------TGGCAGTGTCTTAGCTGGTTG 	9
-----------TGGCAGTGTCTTAGCTGGTT 	8
-----------TGGCAGTGTCTTAGCTGGT 	13
-------------GCAGTGTCTTAGCTGGTTGT 	1
---------------------------------TGTGTGGAGTGAGAACGAAGC 	1
------------------------------------------------CGAAGCAATCAGCAAGTATACTGCCG 	1


Overlaps with: MNEST034253
Overlaps with miRBase pre-miRNAs: dre-mir-34a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 TGGCAGTGTCTTAGCTGGTTGT AATCAGCAAGTATACTGCCGCA up 0 2


Secondary structure

GAGTGGTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGTGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAACTCG
-----------TGGCAGTGTCTTAGCTGGTTG 	1
-----------TGGCAGTGTCTTAGCTGGTTGTT 	89
-----------TGGCAGTGTCTTAGCTGGTTGT 	129
-------------GCAGTGTCTTAGCTGGTTGTT 	1
---------------------------------TGTGTGGAGTGAGAACGAAGC 	5
---------------------------------TGTGTGGAGTGAGAACGAAG 	1


Overlaps with: MNEST034253
Overlaps with miRBase pre-miRNAs: dre-mir-34a
HuntMi prediction: true miRNA