miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGCTCAGTTCAGCAGGAACAG

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TGGCTCAGTTCAGCAGGAACAG GTGCCTACTGAGCTGATATCAGT down 4 1


Secondary structure

ACCCGTCCTCCGGTGCCTACTGAGCTGATATCAGTTCTGATTTTACATACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGC
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG 	3
--------------------------------------------------TGGCTCAGTTCAGCAGGAAC 	1
--------------------------------------------------TGGCTCAGTTCAGCAGGAACA 	16
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAG 	247
---------------------------------------------------GGCTCAGTTCAGCAGGAACAG 	2
---------------------------------------------------GGCTCAGTTCAGCAGGAACA 	1

Overlaps with: MNEST025908
Overlaps with miRBase pre-miRNAs: gga-mir-24
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TGGCTCAGTTCAGCAGGAACAG GTGCCTACTGAGCTGATATCAGT down 4 1


Secondary structure

ACCCGTCCTCCGGTGCCTACTGAGCTGATATCAGTTCTGATTTTACATACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGC
-------------TGCCTACTGAGCTGATATCA 	1
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG 	2
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACA 	1
-------------------------------------------------CTGGCTCAGTTCAGCAGGAAC 	1
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG 	2
--------------------------------------------------TGGCTCAGTTCAGCAGGAAC 	3
--------------------------------------------------TGGCTCAGTTCAGCAGGAA 	1
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAG 	692
--------------------------------------------------TGGCTCAGTTCAGCAGGAACA 	108
---------------------------------------------------GGCTCAGTTCAGCAGGAACAG 	1

Overlaps with: MNEST025908
Overlaps with miRBase pre-miRNAs: gga-mir-24
HuntMi prediction: true miRNA