miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGCTCAGTTCAGCAGGAACAG

selected species: Sus scrofa



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636849 TGGCTCAGTTCAGCAGGAACAG GTGCCTACTGAGCTGATATCAGT down 4 1


Secondary structure

ACCCGCCCTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGC
-----------GGTGCCTACTGAGCTGATATCAG 	1
------------GTGCCTACTGAGCTGATATCAGT 	1
------------GTGCCTACTGAGCTGATATCAG 	1
------------GTGCCTACTGAGCTGATAT 	1
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG 	18
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACA 	4
-------------------------------------------------CTGGCTCAGTTCAGCAGGAAC 	68
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA 	6
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG 	62
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAG 	2305
--------------------------------------------------TGGCTCAGTTCAGCAGGAAC 	1180
--------------------------------------------------TGGCTCAGTTCAGCAGGAA 	35
--------------------------------------------------TGGCTCAGTTCAGCAGGAACA 	279
---------------------------------------------------GGCTCAGTTCAGCAGGAACAGG 	9
---------------------------------------------------GGCTCAGTTCAGCAGGAACAG 	53
---------------------------------------------------GGCTCAGTTCAGCAGGAACA 	6
---------------------------------------------------GGCTCAGTTCAGCAGGAAC 	30
----------------------------------------------------GCTCAGTTCAGCAGGAACAGG 	4
------------------------------------------------------TCAGTTCAGCAGGAACAGG 	1


Overlaps with: MNEST005289 MNEST007091 MNEST008085
Overlaps with miRBase pre-miRNAs: eca-mir-24-2 bta-mir-24-1 mml-mir-24-1 ppa-mir-24-1 hsa-mir-24-1 ppy-mir-24-1 ptr-mir-24-1 mne-mir-24-1 hsa-mir-3074
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636849 TGGCTCAGTTCAGCAGGAACAG GTGCCTACTGAGCTGAAACACAGT down 5 2


Secondary structure

GCCTCCCTGGGCTCTGCCTCCCGTGCCTACTGAGCTGAAACACAGTTGATTTGTGCAGACTGGCTCAGTTCAGCAGGAACAGGAGTCAAGCCCCCTTGGAG
---------------------CGTGCCTACTGAGCTGAAACACAGT 	2
---------------------CGTGCCTACTGAGCTGAAACACAG 	3
---------------------CGTGCCTACTGAGCTGAAACACA 	1
---------------------CGTGCCTACTGAGCTGAAACAC 	3
----------------------GTGCCTACTGAGCTGAAACACAGT 	3
----------------------GTGCCTACTGAGCTGAAACACAG 	2
----------------------GTGCCTACTGAGCTGAAACAC 	3
-----------------------TGCCTACTGAGCTGAAACACAGT 	1
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG 	18
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACA 	4
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAAC 	68
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA 	6
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG 	62
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAG 	2305
------------------------------------------------------------TGGCTCAGTTCAGCAGGAAC 	1180
------------------------------------------------------------TGGCTCAGTTCAGCAGGAA 	35
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACA 	279
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGG 	9
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACAG 	53
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACA 	6
-------------------------------------------------------------GGCTCAGTTCAGCAGGAAC 	30
--------------------------------------------------------------GCTCAGTTCAGCAGGAACAGG 	4
----------------------------------------------------------------TCAGTTCAGCAGGAACAGG 	1


Overlaps with: MNEST026640
Overlaps with miRBase pre-miRNAs: ssc-mir-24-1 cfa-mir-24-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636848 TGGCTCAGTTCAGCAGGAACAG GTGCCTACTGAGCTGATATCAGT down 4 1


Secondary structure

ACCCGCCCTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGC
-----------GGTGCCTACTGAGCTGATATCAGT 	1
------------GTGCCTACTGAGCTGATATCAGT 	9
------------GTGCCTACTGAGCTGATATCA 	2
-------------TGCCTACTGAGCTGATATCAGT 	1
------------------------------------------------ACTGGCTCAGTTCAGCAGGAACAG 	1
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACA 	65
-------------------------------------------------CTGGCTCAGTTCAGCAGGAA 	13
-------------------------------------------------CTGGCTCAGTTCAGCAGGA 	9
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG 	324
-------------------------------------------------CTGGCTCAGTTCAGCAGGAAC 	954
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACAGG 	1
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGAG 	1
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA 	39
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG 	736
--------------------------------------------------TGGCTCAGTTCAGCAGGAAC 	19504
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAG 	29932
--------------------------------------------------TGGCTCAGTTCAGCAGGAACA 	3383
--------------------------------------------------TGGCTCAGTTCAGCAGGAA 	636
---------------------------------------------------GGCTCAGTTCAGCAGGAAC 	224
---------------------------------------------------GGCTCAGTTCAGCAGGAACAGG 	18
---------------------------------------------------GGCTCAGTTCAGCAGGAACAG 	335
---------------------------------------------------GGCTCAGTTCAGCAGGAACA 	29
---------------------------------------------------GGCTCAGTTCAGCAGGAACAGGA 	4
----------------------------------------------------GCTCAGTTCAGCAGGAACAGG 	13
----------------------------------------------------GCTCAGTTCAGCAGGAACA 	1
----------------------------------------------------GCTCAGTTCAGCAGGAACAG 	3
----------------------------------------------------GCTCAGTTCAGCAGGAACAGGA 	6
-----------------------------------------------------CTCAGTTCAGCAGGAACAG 	1
------------------------------------------------------TCAGTTCAGCAGGAACAGG 	1


Overlaps with: MNEST005289 MNEST007091 MNEST008085
Overlaps with miRBase pre-miRNAs: eca-mir-24-2 bta-mir-24-1 mml-mir-24-1 ppa-mir-24-1 hsa-mir-24-1 ppy-mir-24-1 ptr-mir-24-1 mne-mir-24-1 hsa-mir-3074
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TGGCTCAGTTCAGCAGGAACAG GTGCCTACTGAGCTGAAACACAGT down 5 2


Secondary structure

GCCTCCCTGGGCTCTGCCTCCCGTGCCTACTGAGCTGAAACACAGTTGATTTGTGCAGACTGGCTCAGTTCAGCAGGAACAGGAGTCAAGCCCCCTTGGAG
--CTCCCTGGGCTCTGCCTCCC 	1
---TCCCTGGGCTCTGCCTCCC 	1
---------------------CGTGCCTACTGAGCTGAAACACAG 	7
---------------------CGTGCCTACTGAGCTGAAACACAGT 	4
---------------------CGTGCCTACTGAGCTGAAACACA 	7
---------------------CGTGCCTACTGAGCTGAAACAC 	9
---------------------CGTGCCTACTGAGCTGAAAC 	2
---------------------CGTGCCTACTGAGCTGAAA 	1
----------------------GTGCCTACTGAGCTGAAACAC 	12
----------------------GTGCCTACTGAGCTGAAACA 	1
----------------------GTGCCTACTGAGCTGAAACACA 	4
----------------------GTGCCTACTGAGCTGAAACACAG 	15
----------------------GTGCCTACTGAGCTGAAACACAGT 	16
-----------------------TGCCTACTGAGCTGAAACACAGT 	2
--------------------------------------------------------AGACTGGCTCAGTTCAGCAGGAACAG 	1
----------------------------------------------------------ACTGGCTCAGTTCAGCAGGAACAG 	1
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACA 	65
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAA 	13
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGA 	9
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG 	324
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAAC 	954
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAGG 	1
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGAG 	1
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA 	39
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG 	736
------------------------------------------------------------TGGCTCAGTTCAGCAGGAAC 	19504
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAG 	29932
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACA 	3383
------------------------------------------------------------TGGCTCAGTTCAGCAGGAA 	636
-------------------------------------------------------------GGCTCAGTTCAGCAGGAAC 	224
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGG 	18
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACAG 	335
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACA 	29
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGGA 	4
--------------------------------------------------------------GCTCAGTTCAGCAGGAACAGG 	13
--------------------------------------------------------------GCTCAGTTCAGCAGGAACA 	1
--------------------------------------------------------------GCTCAGTTCAGCAGGAACAG 	3
--------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGA 	6
---------------------------------------------------------------CTCAGTTCAGCAGGAACAG 	1
----------------------------------------------------------------TCAGTTCAGCAGGAACAGG 	1


Overlaps with: MNEST026640
Overlaps with miRBase pre-miRNAs: ssc-mir-24-1 cfa-mir-24-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TGGCTCAGTTCAGCAGGAACAG GTGCCTACTGAGCTGATATCAGT down 4 1


Secondary structure

ACCCGCCCTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGC
-----------GGTGCCTACTGAGCTGATATCA 	1
-----------GGTGCCTACTGAGCTGATATCAGT 	2
------------GTGCCTACTGAGCTGATATCAGT 	2
-------------TGCCTACTGAGCTGATATCAGT 	2
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG 	9
-------------------------------------------------CTGGCTCAGTTCAGCAGGAACA 	6
-------------------------------------------------CTGGCTCAGTTCAGCAGGAA 	1
-------------------------------------------------CTGGCTCAGTTCAGCAGGAAC 	100
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA 	2
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG 	38
--------------------------------------------------TGGCTCAGTTCAGCAGGAACAG 	2078
--------------------------------------------------TGGCTCAGTTCAGCAGGAACA 	236
--------------------------------------------------TGGCTCAGTTCAGCAGGAAC 	1037
--------------------------------------------------TGGCTCAGTTCAGCAGGAA 	27
---------------------------------------------------GGCTCAGTTCAGCAGGAACAGG 	7
---------------------------------------------------GGCTCAGTTCAGCAGGAACAG 	39
---------------------------------------------------GGCTCAGTTCAGCAGGAACA 	5
---------------------------------------------------GGCTCAGTTCAGCAGGAACAGGA 	3
---------------------------------------------------GGCTCAGTTCAGCAGGAAC 	30
----------------------------------------------------GCTCAGTTCAGCAGGAACAGG 	2
----------------------------------------------------GCTCAGTTCAGCAGGAACAGGA 	1
------------------------------------------------------TCAGTTCAGCAGGAACAGGA 	2
------------------------------------------------------TCAGTTCAGCAGGAACAGG 	1


Overlaps with: MNEST005289 MNEST007091 MNEST008085
Overlaps with miRBase pre-miRNAs: eca-mir-24-2 bta-mir-24-1 mml-mir-24-1 ppa-mir-24-1 hsa-mir-24-1 ppy-mir-24-1 ptr-mir-24-1 mne-mir-24-1 hsa-mir-3074
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Sus scrofa GSM636846 TGGCTCAGTTCAGCAGGAACAG GTGCCTACTGAGCTGAAACACAGT down 5 2


Secondary structure

GCCTCCCTGGGCTCTGCCTCCCGTGCCTACTGAGCTGAAACACAGTTGATTTGTGCAGACTGGCTCAGTTCAGCAGGAACAGGAGTCAAGCCCCCTTGGAG
---------------------CGTGCCTACTGAGCTGAAACACA 	1
---------------------CGTGCCTACTGAGCTGAAACAC 	1
----------------------GTGCCTACTGAGCTGAAACACA 	2
----------------------GTGCCTACTGAGCTGAAAC 	1
----------------------GTGCCTACTGAGCTGAAACACAG 	1
----------------------GTGCCTACTGAGCTGAAACAC 	1
-----------------------TGCCTACTGAGCTGAAACACAGT 	2
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG 	9
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACA 	6
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAA 	1
-----------------------------------------------------------CTGGCTCAGTTCAGCAGGAAC 	100
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA 	2
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG 	38
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAG 	2078
------------------------------------------------------------TGGCTCAGTTCAGCAGGAACA 	236
------------------------------------------------------------TGGCTCAGTTCAGCAGGAAC 	1037
------------------------------------------------------------TGGCTCAGTTCAGCAGGAA 	27
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGG 	7
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACAG 	39
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACA 	5
-------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGGA 	3
-------------------------------------------------------------GGCTCAGTTCAGCAGGAAC 	30
--------------------------------------------------------------GCTCAGTTCAGCAGGAACAGG 	2
--------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGA 	1
----------------------------------------------------------------TCAGTTCAGCAGGAACAGGA 	2
----------------------------------------------------------------TCAGTTCAGCAGGAACAGG 	1


Overlaps with: MNEST026640
Overlaps with miRBase pre-miRNAs: ssc-mir-24-1 cfa-mir-24-2
HuntMi prediction: true miRNA