miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGGCAAAGTTGGTTGAGAAGT

selected species: Caenorhabditis elegans



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGGGCAAAGTTGGTTGAGAAGT TTCTCAACCAACTTTGGCCACT down 1 0


Secondary structure

TTCGGCGCCACTTTTAAACCAACTTTACCCACTTCTCAACCAACTTTGGCCACTTTTCAACTGCCATTCACAGAAGTGGGCAAAGTTGGTTGAGAAGTGGGTAAAGTTGGGCAAAGTTGGTTAAAGT
----------------------------------------------------------------------------TGGGCAAAGTTGGTTGAGAAGT 	7
----------------------------------------------------------------------------TGGGCAAAGTTGGTTGAGAAG 	1

Overlaps with: MNEST038461
Overlaps with miRBase pre-miRNAs: cel-mir-4814
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TGGGCAAAGTTGGTTGAGAAGT TTCTCAACCAACTTTGGCCACT down 1 0


Secondary structure

TTCGGCGCCACTTTTAAACCAACTTTACCCACTTCTCAACCAACTTTGGCCACTTTTCAACTGCCATTCACAGAAGTGGGCAAAGTTGGTTGAGAAGTGGGTAAAGTTGGGCAAAGTTGGTTAAAGT
-------------------------------------------------------------------------AAGTGGGCAAAGTTGGTTGAGAA 	1
---------------------------------------------------------------------------GTGGGCAAAGTTGGTTGAGAAG 	1
----------------------------------------------------------------------------TGGGCAAAGTTGGTTGAGAAGT 	7
----------------------------------------------------------------------------TGGGCAAAGTTGGTTGAGAAG 	2

Overlaps with: MNEST038461
Overlaps with miRBase pre-miRNAs: cel-mir-4814
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TGGGCAAAGTTGGTTGAGAAGT TTCTCAACCAACTTTGGCCACT down 1 0


Secondary structure

TTCGGCGCCACTTTTAAACCAACTTTACCCACTTCTCAACCAACTTTGGCCACTTTTCAACTGCCATTCACAGAAGTGGGCAAAGTTGGTTGAGAAGTGGGTAAAGTTGGGCAAAGTTGGTTAAAGT
--------------------------------TTCTCAACCAACTTTGGCCACT 	1
---------------------------------TCTCAACCAACTTTGGCCACT 	1
----------------------------------------------------------------------------TGGGCAAAGTTGGTTGAGAAGT 	14
----------------------------------------------------------------------------TGGGCAAAGTTGGTTGAGAAG 	6

Overlaps with: MNEST038461
Overlaps with miRBase pre-miRNAs: cel-mir-4814
HuntMi prediction: true miRNA