miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGGCGGAGCGAATCGATGAT

selected species: Caenorhabditis elegans



15 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGGGCGGAGCGAATCGATGATT TCAGCGTTTTCGAACTCCGCCCAAT down 2 3


Secondary structure

AAAACCGACCAATCAGCGTTTTCGAACTCCGCCCAATCCATCTAATTGGTTGGAAAGTGGGCGGAGCGAATCGATGATTGGTCGGGGA
---------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	79
---------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	36
---------------------------------------------------------TGGGCGGAGCGAATCGATGA 	3
------------------------------------------------------------GCGGAGCGAATCGATGATT 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427344-5691 TGGGCGGAGCGAATCGATGATT TCAGCGATTCGAACTCCGCCCACT down 1 2


Secondary structure

AATTCCGACCAATCAGCGATTCGAACTCCGCCCACTGCACCTGATTGGTTGACAAGTGGGCGGAGCGAATCGATGATTGGTCGGGGG
-------------CAGCGATTCGAACTCCGCCCACT 	1
--------------AGCGATTCGAACTCCGCCCACT 	1
--------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	79
--------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	36
--------------------------------------------------------TGGGCGGAGCGAATCGATGA 	3
-----------------------------------------------------------GCGGAGCGAATCGATGATT 	2

Overlaps with: MNEST038425
Overlaps with miRBase pre-miRNAs: cel-mir-1832a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427344-5691 TGGGCGGAGCGAATCGATGATT TCAGCGCAGTTGAACTCTGCTAAAG down 5 3


Secondary structure

ATCTCCCTCCAAAATATGAACTCTCCGACCAATCAGCGCAGTTGAACTCTGCTAAAGTGGGCGGAGCGAATCGATGATTGGTCGAAGTTCAAATTTTGGAAGAAATTG
---------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	79
---------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	36
---------------------------------------------------------TGGGCGGAGCGAATCGATGA 	3
------------------------------------------------------------GCGGAGCGAATCGATGATT 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427332-5684 TGGGCGGAGCGAATCGATGATT TCAGCGTTTTCGAACTCCGCCCAAT down 2 3


Secondary structure

AAAACCGACCAATCAGCGTTTTCGAACTCCGCCCAATCCATCTAATTGGTTGGAAAGTGGGCGGAGCGAATCGATGATTGGTCGGGGA
---------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	15
---------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	11


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427332-5684 TGGGCGGAGCGAATCGATGATT TCAGCGATTCGAACTCCGCCCACT down 1 2


Secondary structure

AATTCCGACCAATCAGCGATTCGAACTCCGCCCACTGCACCTGATTGGTTGACAAGTGGGCGGAGCGAATCGATGATTGGTCGGGGG
------------TCAGCGATTCGAACTCCGCCCACT 	4
-------------CAGCGATTCGAACTCCGCCCACT 	2
--------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	15
--------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	11

Overlaps with: MNEST038425
Overlaps with miRBase pre-miRNAs: cel-mir-1832a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM427332-5684 TGGGCGGAGCGAATCGATGATT TCAGCGCAGTTGAACTCTGCTAAAG down 5 3


Secondary structure

ATCTCCCTCCAAAATATGAACTCTCCGACCAATCAGCGCAGTTGAACTCTGCTAAAGTGGGCGGAGCGAATCGATGATTGGTCGAAGTTCAAATTTTGGAAGAAATTG
---------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	15
---------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	11


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM427346-5695 TGGGCGGAGCGAATCGATGAT CAGCGTTTTCGAACTCCGCCCAAT down 2 3


Secondary structure

AAACCGACCAATCAGCGTTTTCGAACTCCGCCCAATCCATCTAATTGGTTGGAAAGTGGGCGGAGCGAATCGATGATTGGTCGGGG
-------------------------------------------ATTGGTTGGAAAGTGGGCGGA 	1
--------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	9
--------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	10


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM427346-5695 TGGGCGGAGCGAATCGATGAT CAGCGATTCGAACTCCGCCCACT down 1 2


Secondary structure

ATTCCGACCAATCAGCGATTCGAACTCCGCCCACTGCACCTGATTGGTTGACAAGTGGGCGGAGCGAATCGATGATTGGTCGGGG
------------CAGCGATTCGAACTCCGCCCACT 	1
-------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	9
-------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	10

Overlaps with: MNEST038425
Overlaps with miRBase pre-miRNAs: cel-mir-1832a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Caenorhabditis elegans GSM427346-5695 TGGGCGGAGCGAATCGATGAT CAGCGCAGTTGAACTCTGCTAAAG down 5 3


Secondary structure

TCTCCCTCCAAAATATGAACTCTCCGACCAATCAGCGCAGTTGAACTCTGCTAAAGTGGGCGGAGCGAATCGATGATTGGTCGAAGTTCAAATTTTGGAAGAAATT
--------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	9
--------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	10


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Caenorhabditis elegans GSM427345-5693 TGGGCGGAGCGAATCGATGATT TCAGCGTTTTCGAACTCCGCCCAAT down 2 3


Secondary structure

AAAACCGACCAATCAGCGTTTTCGAACTCCGCCCAATCCATCTAATTGGTTGGAAAGTGGGCGGAGCGAATCGATGATTGGTCGGGGA
---------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	6
---------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Caenorhabditis elegans GSM427345-5693 TGGGCGGAGCGAATCGATGATT TCAGCGATTCGAACTCCGCCCACT down 1 2


Secondary structure

AATTCCGACCAATCAGCGATTCGAACTCCGCCCACTGCACCTGATTGGTTGACAAGTGGGCGGAGCGAATCGATGATTGGTCGGGGG
--------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	6
--------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	4

Overlaps with: MNEST038425
Overlaps with miRBase pre-miRNAs: cel-mir-1832a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Caenorhabditis elegans GSM427345-5693 TGGGCGGAGCGAATCGATGATT TCAGCGCAGTTGAACTCTGCTAAAG down 5 3


Secondary structure

ATCTCCCTCCAAAATATGAACTCTCCGACCAATCAGCGCAGTTGAACTCTGCTAAAGTGGGCGGAGCGAATCGATGATTGGTCGAAGTTCAAATTTTGGAAGAAATTG
---------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	6
---------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Caenorhabditis elegans GSM427297-5679 TGGGCGGAGCGAATCGATGATT TCAGCGTTTTCGAACTCCGCCCAAT down 2 3


Secondary structure

AAAACCGACCAATCAGCGTTTTCGAACTCCGCCCAATCCATCTAATTGGTTGGAAAGTGGGCGGAGCGAATCGATGATTGGTCGGGGA
---------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	5
---------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Caenorhabditis elegans GSM427297-5679 TGGGCGGAGCGAATCGATGATT TCAGCGATTCGAACTCCGCCCACT down 1 2


Secondary structure

AATTCCGACCAATCAGCGATTCGAACTCCGCCCACTGCACCTGATTGGTTGACAAGTGGGCGGAGCGAATCGATGATTGGTCGGGGG
--------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	5
--------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	2

Overlaps with: MNEST038425
Overlaps with miRBase pre-miRNAs: cel-mir-1832a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Caenorhabditis elegans GSM427297-5679 TGGGCGGAGCGAATCGATGATT TCAGCGCAGTTGAACTCTGCTAAAG down 5 3


Secondary structure

ATCTCCCTCCAAAATATGAACTCTCCGACCAATCAGCGCAGTTGAACTCTGCTAAAGTGGGCGGAGCGAATCGATGATTGGTCGAAGTTCAAATTTTGGAAGAAATTG
---------------------------------------------------------TGGGCGGAGCGAATCGATGATT 	5
---------------------------------------------------------TGGGCGGAGCGAATCGATGAT 	2


HuntMi prediction: true miRNA