miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGGTAAACTCCCAAGGATCA

selected species: Drosophila melanogaster



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TGGGTAAACTCCCAAGGATCA ATCCTTGGGTTTCTGCTCTCG up 6 0


Secondary structure

TGATGTAAGCTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGTAGTGCC
---------------------TGGGTAAACTCCCAAGGATCAGG 	16
---------------------TGGGTAAACTCCCAAGGATC 	6
---------------------TGGGTAAACTCCCAAGGATCA 	52
---------------------TGGGTAAACTCCCAAGGAT 	1
---------------------TGGGTAAACTCCCAAGGATCAG 	24
---------------------TGGGTAAACTCCCAAGGATCAGGT 	3
----------------------------------------------------------CGATCCTTGGGTTTCTGCTCT 	1
----------------------------------------------------------CGATCCTTGGGTTTCTGCTCTCG 	1
------------------------------------------------------------ATCCTTGGGTTTCTGCTCT 	1
------------------------------------------------------------ATCCTTGGGTTTCTGCTCTCGG 	3

Overlaps with: MNEST036579 MNEST036580
Overlaps with miRBase pre-miRNAs: dme-mir-1001
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399106-16287 TGGGTAAACTCCCAAGGATCA ATCCTTGGGTTTCTGCTCTCG up 6 0


Secondary structure

TGATGTAAGCTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGTAGTGCC
---------------------TGGGTAAACTCCCAAGGATCAGG 	7
---------------------TGGGTAAACTCCCAAGGATCA 	26
---------------------TGGGTAAACTCCCAAGGATCAG 	4
---------------------TGGGTAAACTCCCAAGGATCAGGT 	1
----------------------------------------------------------CGATCCTTGGGTTTCTGCTCTC 	1

Overlaps with: MNEST036579 MNEST036580
Overlaps with miRBase pre-miRNAs: dme-mir-1001
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM399105-16286 TGGGTAAACTCCCAAGGATCA ATCCTTGGGTTTCTGCTCTCG up 6 0


Secondary structure

TGATGTAAGCTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGTAGTGCC
---------------------TGGGTAAACTCCCAAGGATCAGG 	4
---------------------TGGGTAAACTCCCAAGGATC 	2
---------------------TGGGTAAACTCCCAAGGATCA 	13
---------------------TGGGTAAACTCCCAAGGATCAG 	5
------------------------------------------------------------ATCCTTGGGTTTCTGCTCTCGG 	3

Overlaps with: MNEST036579 MNEST036580
Overlaps with miRBase pre-miRNAs: dme-mir-1001
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM360262-14327 TGGGTAAACTCCCAAGGATCA ATCCTTGGGTTTCTGCTCTCG up 6 0


Secondary structure

TGATGTAAGCTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGTAGTGCC
---------------------TGGGTAAACTCCCAAGGATC 	1
---------------------TGGGTAAACTCCCAAGGATCA 	13
---------------------TGGGTAAACTCCCAAGGATCAG 	9
------------------------------------------------------------ATCCTTGGGTTTCTGCTCTCG 	2
------------------------------------------------------------ATCCTTGGGTTTCTGCTCTCGG 	3

Overlaps with: MNEST036579 MNEST036580
Overlaps with miRBase pre-miRNAs: dme-mir-1001
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM322543-14323 TGGGTAAACTCCCAAGGATCA ATCCTTGGGTTTCTGCTCTCG up 6 0


Secondary structure

TGATGTAAGCTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGTAGTGCC
--------------------CTGGGTAAACTCCCAAGGATC 	7
---------------------TGGGTAAACTCCCAAGGATCAGG 	179
---------------------TGGGTAAACTCCCAAGGATC 	116
---------------------TGGGTAAACTCCCAAGGATCA 	541
---------------------TGGGTAAACTCCCAAGGATCAGGT 	9
---------------------TGGGTAAACTCCCAAGGAT 	47
---------------------TGGGTAAACTCCCAAGGATCAG 	178
----------------------------------------------------------CGATCCTTGGGTTTCTGCTCT 	2
----------------------------------------------------------CGATCCTTGGGTTTCTGCTCTCG 	20
----------------------------------------------------------CGATCCTTGGGTTTCTGCTCTCGG 	7
------------------------------------------------------------ATCCTTGGGTTTCTGCTCTCG 	4
------------------------------------------------------------ATCCTTGGGTTTCTGCTCTCGG 	48
-------------------------------------------------------------TCCTTGGGTTTCTGCTCTCGG 	8

Overlaps with: MNEST036579 MNEST036580
Overlaps with miRBase pre-miRNAs: dme-mir-1001
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM286604-9792 TGGGTAAACTCCCAAGGATCA ATCCTTGGGTTTCTGCTCTCG up 6 0


Secondary structure

TGATGTAAGCTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGTAGTGCC
---------------------TGGGTAAACTCCCAAGGATCAGG 	1
---------------------TGGGTAAACTCCCAAGGATC 	5
---------------------TGGGTAAACTCCCAAGGATCA 	37
---------------------TGGGTAAACTCCCAAGGATCAG 	4

Overlaps with: MNEST036579 MNEST036580
Overlaps with miRBase pre-miRNAs: dme-mir-1001
HuntMi prediction: true miRNA