miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGGTGGTGATCATATAAGAT

selected species: Arabidopsis thaliana



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TGGGTGGTGATCATATAAGAT CTTGTATGATCACTAACCATT down 1 0


Secondary structure

ACAATCACGAATCTTGTATGATCACTAACCATTGGAACAATAAGAGTATATAATGAGTATATCACCATTTAGTTCTAGTGGGTGGTGATCATATAAGATTGGTAATGG
------------CTTGTATGATCACTAACCA 	1
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGAT 	5
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGA 	2


Overlaps with: MNEST040141 MNEST047056
Overlaps with miRBase pre-miRNAs: ath-MIR823
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 TGGGTGGTGATCATATAAGAT CTTGTATGATCACTAACCATT down 1 0


Secondary structure

ACAATCACGAATCTTGTATGATCACTAACCATTGGAACAATAAGAGTATATAATGAGTATATCACCATTTAGTTCTAGTGGGTGGTGATCATATAAGATTGGTAATGG
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGAT 	81
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGA 	1
------------------------------------------------------------------------------TGGGTGGTGATCATATAAG 	1
-------------------------------------------------------------------------------GGGTGGTGATCATATAAGAT 	2


Overlaps with: MNEST040141 MNEST047056
Overlaps with miRBase pre-miRNAs: ath-MIR823
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM424847-4989 TGGGTGGTGATCATATAAGAT CTTGTATGATCACTAACCATT down 1 0


Secondary structure

ACAATCACGAATCTTGTATGATCACTAACCATTGGAACAATAAGAGTATATAATGAGTATATCACCATTTAGTTCTAGTGGGTGGTGATCATATAAGATTGGTAATGG
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGAT 	6
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGA 	2
------------------------------------------------------------------------------TGGGTGGTGATCATATAAG 	1


Overlaps with: MNEST040141 MNEST047056
Overlaps with miRBase pre-miRNAs: ath-MIR823
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366870 TGGGTGGTGATCATATAAGAT CTTGTATGATCACTAACCATT down 1 0


Secondary structure

ACAATCACGAATCTTGTATGATCACTAACCATTGGAACAATAAGAGTATATAATGAGTATATCACCATTTAGTTCTAGTGGGTGGTGATCATATAAGATTGGTAATGG
---------AATCTTGTATGATCACTAACC 	2
-----------------------------------------------------------------------------GTGGGTGGTGATCATATAAGA 	1
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGAT 	27
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGA 	2
---------------------------------------------------------------------------------GTGGTGATCATATAAGATTGG 	4


Overlaps with: MNEST040141 MNEST047056
Overlaps with miRBase pre-miRNAs: ath-MIR823
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366866 TGGGTGGTGATCATATAAGAT CTTGTATGATCACTAACCATT down 1 0


Secondary structure

ACAATCACGAATCTTGTATGATCACTAACCATTGGAACAATAAGAGTATATAATGAGTATATCACCATTTAGTTCTAGTGGGTGGTGATCATATAAGATTGGTAATGG
---------AATCTTGTATGATCACTAACC 	1
----------ATCTTGTATGATCACTAACCA 	1
--------------TGTATGATCACTAACCATTGG 	1
----------------TATGATCACTAACCATTGGAA 	2
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGAT 	19
---------------------------------------------------------------------------------GTGGTGATCATATAAGATTGG 	3


Overlaps with: MNEST040141 MNEST047056
Overlaps with miRBase pre-miRNAs: ath-MIR823
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM424848-4990 TGGGTGGTGATCATATAAGAT CTTGTATGATCACTAACCATT down 1 0


Secondary structure

ACAATCACGAATCTTGTATGATCACTAACCATTGGAACAATAAGAGTATATAATGAGTATATCACCATTTAGTTCTAGTGGGTGGTGATCATATAAGATTGGTAATGG
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGAT 	10


Overlaps with: MNEST040141 MNEST047056
Overlaps with miRBase pre-miRNAs: ath-MIR823
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM518432-13544 TGGGTGGTGATCATATAAGAT CTTGTATGATCACTAACCATT down 1 0


Secondary structure

ACAATCACGAATCTTGTATGATCACTAACCATTGGAACAATAAGAGTATATAATGAGTATATCACCATTTAGTTCTAGTGGGTGGTGATCATATAAGATTGGTAATGG
-------------------------------------------------------------------------TCTAGTGGGTGGTGATCATAT 	1
-----------------------------------------------------------------------------GTGGGTGGTGATCATATAAGA 	5
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGA 	5
------------------------------------------------------------------------------TGGGTGGTGATCATATAAG 	1
------------------------------------------------------------------------------TGGGTGGTGATCATATAAGAT 	68
---------------------------------------------------------------------------------GTGGTGATCATATAAGATTGG 	21


Overlaps with: MNEST040141 MNEST047056
Overlaps with miRBase pre-miRNAs: ath-MIR823
HuntMi prediction: true miRNA