miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGGTAGACTATGGAACGTAGG

selected species: Homo sapiens

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Homo sapiens	GSM651905	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
---------------------TGGTAGACTATGGAACGTAGGC 	20
---------------------TGGTAGACTATGGAACGTAGG 	570
---------------------TGGTAGACTATGGAACGTAG 	250
---------------------TGGTAGACTATGGAACGTA 	36
----------------------GGTAGACTATGGAACGTAGG 	4
----------------------GGTAGACTATGGAACGTAG 	6
----------------------GGTAGACTATGGAACGTAGGC 	1
-----------------------------------------------------------TATGTAACATGGTCCACTAACT 	4
-----------------------------------------------------------TATGTAACATGGTCCACTAAC 	6
-----------------------------------------------------------TATGTAACATGGTCCACTAA 	1

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Homo sapiens	GSM494810_Normal_2	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
---------------------TGGTAGACTATGGAACGTAGGC 	12
---------------------TGGTAGACTATGGAACGTAGG 	125
---------------------TGGTAGACTATGGAACGTAG 	9
---------------------TGGTAGACTATGGAACGTA 	1

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Homo sapiens	GSM531974	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
---------------------TGGTAGACTATGGAACGTAGG 	77
---------------------TGGTAGACTATGGAACGTAG 	41
---------------------TGGTAGACTATGGAACGTA 	4

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Homo sapiens	GSM494809_Normal_1	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
---------------------TGGTAGACTATGGAACGTAGG 	12
---------------------TGGTAGACTATGGAACGTAG 	1

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Homo sapiens	GSM651908	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
-TTCCGTGGTTCCTGAAGAGA 	1
--------------------ATGGTAGACTATGGAACGTAGG 	6
---------------------TGGTAGACTATGGAACGTAGGC 	26
---------------------TGGTAGACTATGGAACGTAGG 	565
---------------------TGGTAGACTATGGAACGTAG 	245
---------------------TGGTAGACTATGGAACGTA 	45
----------------------GGTAGACTATGGAACGTAGG 	9
----------------------GGTAGACTATGGAACGTAG 	3
-----------------------------------------------------------TATGTAACATGGTCCACTAA 	1

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Homo sapiens	GSM651906	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
--------------------ATGGTAGACTATGGAACGTAGG 	1
--------------------ATGGTAGACTATGGAACGTAG 	1
---------------------TGGTAGACTATGGAACGTAGGC 	28
---------------------TGGTAGACTATGGAACGTAGG 	417
---------------------TGGTAGACTATGGAACGTAG 	157
---------------------TGGTAGACTATGGAACGTA 	21
---------------------TGGTAGACTATGGAACGTAGGCG 	1
---------------------TGGTAGACTATGGAACGTAGGCGT 	1
----------------------GGTAGACTATGGAACGTAGG 	3
----------------------GGTAGACTATGGAACGTAG 	1
-----------------------------------------------------------TATGTAACATGGTCCACTAAC 	4

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Homo sapiens	GSM531982	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
ATTCCGTGGTTCCTGAAGAGA 	2
-TTCCGTGGTTCCTGAAGAGA 	2
--TCCGTGGTTCCTGAAGAGA 	1
--------------------ATGGTAGACTATGGAACGTAGG 	2
---------------------TGGTAGACTATGGAACGTAGGC 	272
---------------------TGGTAGACTATGGAACGTAGG 	1999
---------------------TGGTAGACTATGGAACGTAG 	993
---------------------TGGTAGACTATGGAACGTA 	112
---------------------TGGTAGACTATGGAACGTAGGCGTT 	5
---------------------TGGTAGACTATGGAACGTAGGCGT 	5
---------------------TGGTAGACTATGGAACGTAGGCG 	5
---------------------TGGTAGACTATGGAACGTAGGCGTTA 	1
----------------------GGTAGACTATGGAACGTAGG 	26
----------------------GGTAGACTATGGAACGTAGGC 	3
----------------------GGTAGACTATGGAACGTAG 	6
-----------------------GTAGACTATGGAACGTAGGCGTTAT 	1
------------------------TAGACTATGGAACGTAGGCGTT 	1
-----------------------------------------------------------TATGTAACATGGTCCACTAACT 	12
-----------------------------------------------------------TATGTAACATGGTCCACTAAC 	139
-----------------------------------------------------------TATGTAACATGGTCCACTAA 	22
-----------------------------------------------------------TATGTAACATGGTCCACTA 	4

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Homo sapiens	GSM494811_K562	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
---------------------TGGTAGACTATGGAACGTAGG 	10

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Homo sapiens	GSM531978	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
-TTCCGTGGTTCCTGAAGAGA 	3
---------------------TGGTAGACTATGGAACGTAGGC 	10
---------------------TGGTAGACTATGGAACGTAGG 	231
---------------------TGGTAGACTATGGAACGTAG 	157
---------------------TGGTAGACTATGGAACGTA 	28
---------------------TGGTAGACTATGGAACGTAGGCG 	1
----------------------GGTAGACTATGGAACGTAG 	1

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Homo sapiens	GSM651907	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
--------------------ATGGTAGACTATGGAACGTAGG 	5
--------------------ATGGTAGACTATGGAACGTA 	1
---------------------TGGTAGACTATGGAACGTAGGC 	61
---------------------TGGTAGACTATGGAACGTAGG 	755
---------------------TGGTAGACTATGGAACGTAG 	286
---------------------TGGTAGACTATGGAACGTA 	48
---------------------TGGTAGACTATGGAACGTAGGCG 	1
----------------------GGTAGACTATGGAACGTAGG 	5
----------------------GGTAGACTATGGAACGTAG 	2
-----------------------------------------------------------TATGTAACATGGTCCACTAAC 	5
-----------------------------------------------------------TATGTAACATGGTCCACTAACT 	1
-----------------------------------------------------------TATGTAACATGGTCCACTAA 	1

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Homo sapiens	GSM531986-13294	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
---------------------TGGTAGACTATGGAACGTAGG 	32
---------------------TGGTAGACTATGGAACGTAG 	17
---------------------TGGTAGACTATGGAACGTA 	1

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Homo sapiens	GSM531975	TGGTAGACTATGGAACGTAGG	TATGTAACATGGTCCACTAAC	up	3	0

Secondary structure

ATTCCGTGGTTCCTGAAGAGATGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCAATCCAT
---------------------TGGTAGACTATGGAACGTAGG 	72
---------------------TGGTAGACTATGGAACGTAG 	36
---------------------TGGTAGACTATGGAACGTA 	2
---------------------TGGTAGACTATGGAACGTAGGC 	1
---------------------TGGTAGACTATGGAACGTAGGCGT 	1
----------------------GGTAGACTATGGAACGTAGG 	2
----------------------GGTAGACTATGGAACGTAGGCGT 	1
-----------------------------------------------------------TATGTAACATGGTCCACTAACT 	1
-----------------------------------------------------------TATGTAACATGGTCCACTAAC 	1

Overlaps with: MNEST028632
Overlaps with miRBase pre-miRNAs: ptr-mir-379 hsa-mir-379
HuntMi prediction: true miRNA