miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGTATCATGTTGCAAATGGC

selected species: Physcomitrella patens



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TGGTATCATGTTGCAAATGGC AATTTGAAGCATGATGTCAAG up 3 0


Secondary structure

GTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACG
--------------TTGATCTTGGTATCATGTTGC 	1
------------------TCTTGGTATCATGTTGCAAAT 	1
---------------------TGGTATCATGTTGCAAATGGCA 	2
---------------------TGGTATCATGTTGCAAATGGC 	127
---------------------TGGTATCATGTTGCAAATGG 	7
---------------------TGGTATCATGTTGCAAATGGCAAA 	1
----------------------GGTATCATGTTGCAAATGGC 	2
----------------------------------------------------------------------TTTTGAAATTTGAAGCATGAT 	3
-----------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	3
-------------------------------------------------------------------------TGAAATTTGAAGCATGATGTCAAG 	1
---------------------------------------------------------------------------AAATTTGAAGCATGATGTCAAG 	2
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	97
-----------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	2
-------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	1
--------------------------------------------------------------------------------TGAAGCATGATGTCAAGTACA 	1
---------------------------------------------------------------------------------------TGATGTCAAGTACAACGGAAG 	1


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 TGGTATCATGTTGCAAATGGC AATTTGAAGCATGATGTCAAG up 3 0


Secondary structure

GTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACG
------------------TCTTGGTATCATGTTGCAAAT 	1
---------------------TGGTATCATGTTGCAAATGGCA 	4
---------------------TGGTATCATGTTGCAAATGGC 	158
---------------------TGGTATCATGTTGCAAATGG 	5
---------------------TGGTATCATGTTGCAAATGGCAAA 	2
--------------------------TCATGTTGCAAATGGCAAAA 	1
-----------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	4
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	69
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAA 	1
-----------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	1
-------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	4
--------------------------------------------------------------------------------TGAAGCATGATGTCAAGTAC 	2
---------------------------------------------------------------------------------GAAGCATGATGTCAAGTAC 	2


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115096 TGGTATCATGTTGCAAATGGC AATTTGAAGCATGATGTCAAG up 3 0


Secondary structure

GTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACG
--------------TTGATCTTGGTATCATGTTGC 	3
------------------TCTTGGTATCATGTTGCAAAT 	2
---------------------TGGTATCATGTTGCAAATGGCA 	9
---------------------TGGTATCATGTTGCAAATGGC 	377
---------------------TGGTATCATGTTGCAAATGG 	32
---------------------TGGTATCATGTTGCAAATGGCAAA 	3
---------------------TGGTATCATGTTGCAAATG 	2
----------------------GGTATCATGTTGCAAATGGC 	1
---------------------------------------------ACCTGTGACCGGAATGGTACTCAGTT 	1
-----------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	4
------------------------------------------------------------------------TTGAAATTTGAAGCATGATG 	1
-------------------------------------------------------------------------TGAAATTTGAAGCATGATGTCAAG 	2
-------------------------------------------------------------------------TGAAATTTGAAGCATGATGTCAA 	1
---------------------------------------------------------------------------AAATTTGAAGCATGATGTCAAG 	1
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	108
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAA 	1
-----------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	2
------------------------------------------------------------------------------TTTGAAGCATGATGTCAAG 	1
-------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	6
---------------------------------------------------------------------------------GAAGCATGATGTCAAGTACA 	2


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313216 TGGTATCATGTTGCAAATGGC AATTTGAAGCATGATGTCAAG up 3 0


Secondary structure

GTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACG
----------------GATCTTGGTATCATGTTGC 	1
-----------------ATCTTGGTATCATGTTGCAAA 	1
-----------------ATCTTGGTATCATGTTGCAA 	1
------------------TCTTGGTATCATGTTGCAAAT 	4
---------------------TGGTATCATGTTGCAAATGGCAAA 	1
---------------------TGGTATCATGTTGCAAATGGC 	192
---------------------TGGTATCATGTTGCAAATGG 	13
---------------------TGGTATCATGTTGCAAATGGCA 	1
--------------------------TCATGTTGCAAATGGCAAAAC 	3
---------------------------------------------ACCTGTGACCGGAATGGTACTCAGT 	1
---------------------------------------------ACCTGTGACCGGAATGGTACTCAGTT 	3
-----------------------------------------------CTGTGACCGGAATGGTACTCAGT 	1
-----------------------------------------------CTGTGACCGGAATGGTACTCAGTTT 	1
-----------------------------------------------CTGTGACCGGAATGGTACTCAGTT 	2
-----------------------------------------------CTGTGACCGGAATGGTACTCAG 	1
------------------------------------------------TGTGACCGGAATGGTACTCAGT 	2
----------------------------------------------------------------------TTTTGAAATTTGAAGCATGAT 	1
-----------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	1
-------------------------------------------------------------------------TGAAATTTGAAGCATGATGTCAAG 	2
--------------------------------------------------------------------------GAAATTTGAAGCATGATGTCAAG 	1
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	40
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAA 	3
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAGT 	1
-----------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	3
------------------------------------------------------------------------------TTTGAAGCATGATGTCAAG 	1
-------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	2


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313217 TGGTATCATGTTGCAAATGGC AATTTGAAGCATGATGTCAAG up 3 0


Secondary structure

GTTCCTGTTTCTGGTTGATCTTGGTATCATGTTGCAAATGGCAAAACCTGTGACCGGAATGGTACTCAGTTTTTGAAATTTGAAGCATGATGTCAAGTACAACGGAAGTTGGACG
------------------TCTTGGTATCATGTTGCAAA 	1
------------------TCTTGGTATCATGTTGCAAAT 	5
---------------------TGGTATCATGTTGCAAATGGCAAA 	2
---------------------TGGTATCATGTTGCAAATGGC 	173
---------------------TGGTATCATGTTGCAAATGG 	7
---------------------TGGTATCATGTTGCAAATGGCA 	2
----------------------GGTATCATGTTGCAAATGGC 	2
--------------------------TCATGTTGCAAATGGCAAAAC 	5
---------------------------CATGTTGCAAATGGCAAAACC 	1
----------------------------------------------CCTGTGACCGGAATGGTACTCAGTT 	1
-----------------------------------------------CTGTGACCGGAATGGTACTCAGT 	1
-----------------------------------------------CTGTGACCGGAATGGTACTCAGTT 	3
----------------------------------------------------------------------TTTTGAAATTTGAAGCATGAT 	1
-----------------------------------------------------------------------TTTGAAATTTGAAGCATGA 	1
-----------------------------------------------------------------------TTTGAAATTTGAAGCATGATG 	2
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAA 	2
----------------------------------------------------------------------------AATTTGAAGCATGATGTCAAG 	39
-----------------------------------------------------------------------------ATTTGAAGCATGATGTCAAG 	2
-------------------------------------------------------------------------------TTGAAGCATGATGTCAAGTAC 	2


Overlaps with: MNEST039690 MNEST039691
Overlaps with miRBase pre-miRNAs: ppt-MIR1217
HuntMi prediction: true miRNA