miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGTGCTTGGACGAATTTGCTA

selected species: Vitis vinifera



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458930-2718 TGGTGCTTGGACGAATTTGCTA ACAAGTTCATCCAAGCACCATC down 3 0


Secondary structure

CAGAAGAATTTTGATGATCTTCACAAGTTCATCCAAGCACCATCTAAAGCTCAAACAGGCCTACGGTTTTCTTCAAAACTAGGCTTATTCATGATGGTGCTTGGACGAATTTGCTAAGAACATTAAGTTCTTGAA
--------------------TCACAAGTTCATCCAAGCACCATC 	2
--------------------TCACAAGTTCATCCAAGCACCAT 	2
--------------------TCACAAGTTCATCCAAGCACCA 	307
--------------------TCACAAGTTCATCCAAGCACC 	161
--------------------TCACAAGTTCATCCAAGCAC 	11
--------------------TCACAAGTTCATCCAAGCA 	2
---------------------CACAAGTTCATCCAAGCACCA 	1
----------------------ACAAGTTCATCCAAGCACCATCT 	2
----------------------ACAAGTTCATCCAAGCACCATC 	2
----------------------ACAAGTTCATCCAAGCACCAT 	2
----------------------ACAAGTTCATCCAAGCACCA 	6
-----------------------------------------------------------------------------------------CATGATGGTGCTTGGACGAATTTG 	1
--------------------------------------------------------------------------------------------GATGGTGCTTGGACGAATTTGCTA 	5
--------------------------------------------------------------------------------------------GATGGTGCTTGGACGAATTT 	1
---------------------------------------------------------------------------------------------ATGGTGCTTGGACGAATTTGCTA 	3
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCTAAG 	7
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCTAA 	24
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCTA 	2079
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCT 	236
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGC 	46
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTG 	1
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGCTA 	87
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGCT 	14
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGC 	4
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAAGAA 	1
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAAGA 	8
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAAG 	192
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAA 	70
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTA 	264
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCT 	53
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAAGA 	8
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAAG 	144
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAA 	19
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTA 	50
--------------------------------------------------------------------------------------------------GCTTGGACGAATTTGCTAAGA 	1
--------------------------------------------------------------------------------------------------GCTTGGACGAATTTGCTAAG 	3
--------------------------------------------------------------------------------------------------GCTTGGACGAATTTGCTAA 	1
---------------------------------------------------------------------------------------------------CTTGGACGAATTTGCTAAGA 	1
----------------------------------------------------------------------------------------------------TTGGACGAATTTGCTAAGAAC 	1
-----------------------------------------------------------------------------------------------------TGGACGAATTTGCTAAGAAC 	1


Overlaps with: MNEST041700
Overlaps with miRBase pre-miRNAs: vvi-MIR3623
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458929-2717 TGGTGCTTGGACGAATTTGCTA ACAAGTTCATCCAAGCACCATC down 3 0


Secondary structure

CAGAAGAATTTTGATGATCTTCACAAGTTCATCCAAGCACCATCTAAAGCTCAAACAGGCCTACGGTTTTCTTCAAAACTAGGCTTATTCATGATGGTGCTTGGACGAATTTGCTAAGAACATTAAGTTCTTGAA
--------------------TCACAAGTTCATCCAAGCACCAT 	2
--------------------TCACAAGTTCATCCAAGCACCA 	219
--------------------TCACAAGTTCATCCAAGCACC 	118
--------------------TCACAAGTTCATCCAAGCAC 	15
--------------------TCACAAGTTCATCCAAGCA 	2
---------------------CACAAGTTCATCCAAGCACCAT 	2
---------------------CACAAGTTCATCCAAGCACCA 	3
----------------------ACAAGTTCATCCAAGCACCATC 	1
----------------------ACAAGTTCATCCAAGCACCAT 	7
----------------------ACAAGTTCATCCAAGCACCA 	4
-------------------------------------------------------------------------------------------TGATGGTGCTTGGACGAATTTGCT 	1
--------------------------------------------------------------------------------------------GATGGTGCTTGGACGAATTTGCTA 	1
---------------------------------------------------------------------------------------------ATGGTGCTTGGACGAATTTGCTA 	1
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCTAA 	11
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCTA 	1245
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCT 	142
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGC 	33
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTG 	2
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGCTAAG 	1
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGCTA 	48
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGCT 	7
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGC 	2
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAAGA 	1
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAAG 	36
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAA 	23
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTA 	77
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCT 	45
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAAGA 	5
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAAG 	59
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAA 	4
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTA 	12
--------------------------------------------------------------------------------------------------GCTTGGACGAATTTGCTAAG 	1
----------------------------------------------------------------------------------------------------TTGGACGAATTTGCTAAGAAC 	3


Overlaps with: MNEST041700
Overlaps with miRBase pre-miRNAs: vvi-MIR3623
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458928-2716 TGGTGCTTGGACGAATTTGCTA ACAAGTTCATCCAAGCACCATC down 3 0


Secondary structure

CAGAAGAATTTTGATGATCTTCACAAGTTCATCCAAGCACCATCTAAAGCTCAAACAGGCCTACGGTTTTCTTCAAAACTAGGCTTATTCATGATGGTGCTTGGACGAATTTGCTAAGAACATTAAGTTCTTGAA
--------------------TCACAAGTTCATCCAAGCACCA 	122
--------------------TCACAAGTTCATCCAAGCACC 	59
--------------------TCACAAGTTCATCCAAGCAC 	7
--------------------TCACAAGTTCATCCAAGCA 	2
---------------------CACAAGTTCATCCAAGCACCAT 	1
---------------------CACAAGTTCATCCAAGCACCA 	1
----------------------ACAAGTTCATCCAAGCACCATCTA 	1
----------------------ACAAGTTCATCCAAGCACCATCT 	2
----------------------ACAAGTTCATCCAAGCACCATC 	10
----------------------ACAAGTTCATCCAAGCACCAT 	7
----------------------ACAAGTTCATCCAAGCACCA 	4
----------------------ACAAGTTCATCCAAGCACC 	1
-----------------------CAAGTTCATCCAAGCACCATC 	1
-----------------------CAAGTTCATCCAAGCACCA 	1
-----------------------------------------------------------------------------------------CATGATGGTGCTTGGACGAATTTG 	1
--------------------------------------------------------------------------------------------GATGGTGCTTGGACGAATTTGCTA 	16
--------------------------------------------------------------------------------------------GATGGTGCTTGGACGAATTTGCT 	2
---------------------------------------------------------------------------------------------ATGGTGCTTGGACGAATTTGCTAA 	2
---------------------------------------------------------------------------------------------ATGGTGCTTGGACGAATTTGCTA 	16
---------------------------------------------------------------------------------------------ATGGTGCTTGGACGAATTTGCT 	1
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCTAAG 	10
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCTAA 	121
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCTA 	10232
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGCT 	760
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTGC 	233
----------------------------------------------------------------------------------------------TGGTGCTTGGACGAATTTG 	5
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGCTAA 	1
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGCTA 	442
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGCT 	44
-----------------------------------------------------------------------------------------------GGTGCTTGGACGAATTTGC 	13
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAAGA 	7
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAAG 	124
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTAA 	92
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCTA 	426
------------------------------------------------------------------------------------------------GTGCTTGGACGAATTTGCT 	86
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAAGA 	5
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAAG 	47
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTAA 	9
-------------------------------------------------------------------------------------------------TGCTTGGACGAATTTGCTA 	43
--------------------------------------------------------------------------------------------------GCTTGGACGAATTTGCTAA 	2
---------------------------------------------------------------------------------------------------CTTGGACGAATTTGCTAAGA 	3
---------------------------------------------------------------------------------------------------CTTGGACGAATTTGCTAAG 	1
----------------------------------------------------------------------------------------------------TTGGACGAATTTGCTAAGAAC 	1
-----------------------------------------------------------------------------------------------------TGGACGAATTTGCTAAGAAC 	1


Overlaps with: MNEST041700
Overlaps with miRBase pre-miRNAs: vvi-MIR3623
HuntMi prediction: true miRNA