miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTAAACATCCTACACTCAGCT

selected species: Danio rerio



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TGTAAACATCCTACACTCAGCT CTGGGCGGAGGGTGTTTGCTGT up 4 0


Secondary structure

TTCATCTTCCAGTGTAGTCGCTGTAAACATCCTACACTCAGCTGTGAGCTGCAGACGAGGCTGGGCGGAGGGTGTTTGCTGTGACTGTCTGGAGCTCCTC
---------------------TGTAAACATCCTACACTCAGCT 	40

Overlaps with: MNEST034248
Overlaps with miRBase pre-miRNAs: dre-mir-30b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TGTAAACATCCTACACTCAGCT CTGGGCGGAGGGTGTTTGCTGT up 4 0


Secondary structure

TTCATCTTCCAGTGTAGTCGCTGTAAACATCCTACACTCAGCTGTGAGCTGCAGACGAGGCTGGGCGGAGGGTGTTTGCTGTGACTGTCTGGAGCTCCTC
--------------------CTGTAAACATCCTACACTCAGCT 	1
---------------------TGTAAACATCCTACACTCAGCT 	302
---------------------TGTAAACATCCTACACTCAGC 	8
---------------------TGTAAACATCCTACACTCAG 	2
----------------------GTAAACATCCTACACTCAGCT 	2
------------------------------------------------------------CTGGGCGGAGGGTGTTTGC 	1
------------------------------------------------------------CTGGGCGGAGGGTGTTTGCTGT 	4

Overlaps with: MNEST034248
Overlaps with miRBase pre-miRNAs: dre-mir-30b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540642 TGTAAACATCCTACACTCAGCT CTGGGCGGAGGGTGTTTGCTGT up 4 0


Secondary structure

TTCATCTTCCAGTGTAGTCGCTGTAAACATCCTACACTCAGCTGTGAGCTGCAGACGAGGCTGGGCGGAGGGTGTTTGCTGTGACTGTCTGGAGCTCCTC
---------------------TGTAAACATCCTACACTCAGCT 	167
---------------------TGTAAACATCCTACACTCAGC 	2
------------------------------------------------------------CTGGGCGGAGGGTGTTTGCTGT 	4
-------------------------------------------------------------TGGGCGGAGGGTGTTTGCTGT 	1

Overlaps with: MNEST034248
Overlaps with miRBase pre-miRNAs: dre-mir-30b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 TGTAAACATCCTACACTCAGCT CTGGGCGGAGGGTGTTTGCTGT up 4 0


Secondary structure

TTCATCTTCCAGTGTAGTCGCTGTAAACATCCTACACTCAGCTGTGAGCTGCAGACGAGGCTGGGCGGAGGGTGTTTGCTGTGACTGTCTGGAGCTCCTC
---------------------TGTAAACATCCTACACTCAGCT 	95
---------------------TGTAAACATCCTACACTCAG 	1
------------------------------------------------------------CTGGGCGGAGGGTGTTTGCTGT 	28

Overlaps with: MNEST034248
Overlaps with miRBase pre-miRNAs: dre-mir-30b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 TGTAAACATCCTACACTCAGCT CTGGGCGGAGGGTGTTTGCTGT up 4 0


Secondary structure

TTCATCTTCCAGTGTAGTCGCTGTAAACATCCTACACTCAGCTGTGAGCTGCAGACGAGGCTGGGCGGAGGGTGTTTGCTGTGACTGTCTGGAGCTCCTC
--------------------CTGTAAACATCCTACACTCAGCT 	1
---------------------TGTAAACATCCTACACTCAGC 	71
---------------------TGTAAACATCCTACACTCAGCT 	1760
---------------------TGTAAACATCCTACACTCAG 	1
----------------------GTAAACATCCTACACTCAGCT 	1
------------------------------------------------------------CTGGGCGGAGGGTGTTTGCTG 	5
------------------------------------------------------------CTGGGCGGAGGGTGTTTGCTGT 	75
-------------------------------------------------------------TGGGCGGAGGGTGTTTGCTGT 	1
-------------------------------------------------------------TGGGCGGAGGGTGTTTGCTGTGA 	1

Overlaps with: MNEST034248
Overlaps with miRBase pre-miRNAs: dre-mir-30b
HuntMi prediction: true miRNA