miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTAAACATCCTACACTCAGCT

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TGTAAACATCCTACACTCAGCT CTGGGAGGTGGATGTTTACTTC up 2 2


Secondary structure

AAGTCCTTCTTTAAACCGAGTTTTCAGTTCGTGTAAACATCCTACACTCAGCTGTAATACATGGATTGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGAATATCAACCGTTATCA
-------------------------------TGTAAACATCCTACACTCAGCT 	327
-------------------------------TGTAAACATCCTACACTCAGC 	50
-------------------------------TGTAAACATCCTACACTCA 	5
--------------------------------GTAAACATCCTACACTCAGCT 	1
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTTC 	1
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTTCA 	1
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTT 	1
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACT 	5

Overlaps with: MNEST033940 MNEST033941
Overlaps with miRBase pre-miRNAs: ssc-mir-30b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TGTAAACATCCTACACTCAGCT CTGGGAGGTGGATGTTTACTTC up 2 2


Secondary structure

AAGTCCTTCTTTAAACCGAGTTTTCAGTTCGTGTAAACATCCTACACTCAGCTGTAATACATGGATTGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGAATATCAACCGTTATCA
-------------------------------TGTAAACATCCTACACTCAGCT 	142
-------------------------------TGTAAACATCCTACACTCAGC 	38
-------------------------------TGTAAACATCCTACACTCA 	1
-------------------------------TGTAAACATCCTACACTCAG 	2
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTT 	1
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTTC 	6
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACT 	8

Overlaps with: MNEST033940 MNEST033941
Overlaps with miRBase pre-miRNAs: ssc-mir-30b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TGTAAACATCCTACACTCAGCT CTGGGAGGTGGATGTTTACTTC up 2 2


Secondary structure

AAGTCCTTCTTTAAACCGAGTTTTCAGTTCGTGTAAACATCCTACACTCAGCTGTAATACATGGATTGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGAATATCAACCGTTATCA
-------------------------------TGTAAACATCCTACACTCAGCT 	361
-------------------------------TGTAAACATCCTACACTCAGC 	71
-------------------------------TGTAAACATCCTACACTCAG 	4
--------------------------------GTAAACATCCTACACTCAGCT 	1
---------------------------------TAAACATCCTACACTCAGCT 	1
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTT 	5
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTTC 	10
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACT 	6

Overlaps with: MNEST033940 MNEST033941
Overlaps with miRBase pre-miRNAs: ssc-mir-30b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TGTAAACATCCTACACTCAGCT CTGGGAGGTGGATGTTTACTTC up 2 2


Secondary structure

AAGTCCTTCTTTAAACCGAGTTTTCAGTTCGTGTAAACATCCTACACTCAGCTGTAATACATGGATTGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGAATATCAACCGTTATCA
---------TTTAAACCGAGTTTTCAGTTCG 	2
-------------------------------TGTAAACATCCTACACTCAGCT 	4619
-------------------------------TGTAAACATCCTACACTCAGCTGT 	2
-------------------------------TGTAAACATCCTACACTCAG 	38
-------------------------------TGTAAACATCCTACACTCA 	20
-------------------------------TGTAAACATCCTACACTCAGCTG 	16
-------------------------------TGTAAACATCCTACACTCAGC 	715
--------------------------------GTAAACATCCTACACTCAGC 	2
--------------------------------GTAAACATCCTACACTCAGCT 	7
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACT 	5
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTTC 	12

Overlaps with: MNEST033940 MNEST033941
Overlaps with miRBase pre-miRNAs: ssc-mir-30b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TGTAAACATCCTACACTCAGCT CTGGGAGGTGGATGTTTACTTC up 2 2


Secondary structure

AAGTCCTTCTTTAAACCGAGTTTTCAGTTCGTGTAAACATCCTACACTCAGCTGTAATACATGGATTGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGAATATCAACCGTTATCA
-------------------------------TGTAAACATCCTACACTCAGCTG 	1
-------------------------------TGTAAACATCCTACACTCAGCT 	322
-------------------------------TGTAAACATCCTACACTCAGC 	59
-------------------------------TGTAAACATCCTACACTCAG 	3
--------------------------------GTAAACATCCTACACTCAGC 	1
--------------------------------GTAAACATCCTACACTCAGCT 	1
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTT 	2
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACTTC 	3
---------------------------------------------------------------------CTGGGAGGTGGATGTTTACT 	5

Overlaps with: MNEST033940 MNEST033941
Overlaps with miRBase pre-miRNAs: ssc-mir-30b
HuntMi prediction: true miRNA