miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTACAATACGAATATTTAGGC

selected species: Drosophila melanogaster



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TGTACAATACGAATATTTAGGC CTAAATATTTTTTTTGTATAAA down 5 0


Secondary structure

ATAGGGAAATTGCTAAATATTTTTTTTGTATAAATAACTTTTAACTTTTGTACAATACGAATATTTAGGCATTTCTCAA
----------------------------------------------TTTGTACAATACGAATATTTAGG 	4
-----------------------------------------------TTGTACAATACGAATATTTAGG 	2
------------------------------------------------TGTACAATACGAATATTTAGG 	30
------------------------------------------------TGTACAATACGAATATTTAGGCA 	4
------------------------------------------------TGTACAATACGAATATTTAGGC 	50
--------------------------------------------------TACAATACGAATATTTAGGCA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399105-16286 TGTACAATACGAATATTTAGGC CTAAATATTTTTTTTGTATAAA down 5 0


Secondary structure

ATAGGGAAATTGCTAAATATTTTTTTTGTATAAATAACTTTTAACTTTTGTACAATACGAATATTTAGGCATTTCTCAA
----------------------------------------------TTTGTACAATACGAATATTTAGG 	1
-----------------------------------------------TTGTACAATACGAATATTTAG 	1
-----------------------------------------------TTGTACAATACGAATATTTAGG 	1
------------------------------------------------TGTACAATACGAATATTTAGG 	7
------------------------------------------------TGTACAATACGAATATTTAGGC 	39
--------------------------------------------------TACAATACGAATATTTAGGCA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM286607-9796 TGTACAATACGAATATTTAGGC CTAAATATTTTTTTTGTATAAA down 5 0


Secondary structure

ATAGGGAAATTGCTAAATATTTTTTTTGTATAAATAACTTTTAACTTTTGTACAATACGAATATTTAGGCATTTCTCAA
------------------------------------------------TGTACAATACGAATATTTAGGC 	18


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399110-16285 TGTACAATACGAATATTTAGGC CTAAATATTTTTTTTGTATAAA down 5 0


Secondary structure

ATAGGGAAATTGCTAAATATTTTTTTTGTATAAATAACTTTTAACTTTTGTACAATACGAATATTTAGGCATTTCTCAA
------------------------------------------------TGTACAATACGAATATTTAGGC 	7


HuntMi prediction: true miRNA