miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGTCATGGAGGCGCTCTCTTCA

selected species: Caenorhabditis elegans



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TGTCATGGAGGCGCTCTCTTCA AAGAGAGCAGTCTATTGACAGT down 2 2


Secondary structure

CGACTGAAACTGAAGAGAGCAGTCTATTGACAGTCGGTTACTCGAAATCTTTACTGTCATGGAGGCGCTCTCTTCAGATGATGTC
------------AAGAGAGCAGTCTATTGACAGT 	51
------------AAGAGAGCAGTCTATTGACAG 	3
------------AAGAGAGCAGTCTATTGACAGTCG 	1
-----------------------------------------------------CTGTCATGGAGGCGCTCTCTTC 	3
------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA 	63
------------------------------------------------------TGTCATGGAGGCGCTCTCTTC 	14
--------------------------------------------------------TCATGGAGGCGCTCTCTTCA 	1

Overlaps with: MNEST038284
Overlaps with miRBase pre-miRNAs: cel-mir-47
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TGTCATGGAGGCGCTCTCTTCA AAGAGAGCAGTCTATTGACAGT down 2 2


Secondary structure

CGACTGAAACTGAAGAGAGCAGTCTATTGACAGTCGGTTACTCGAAATCTTTACTGTCATGGAGGCGCTCTCTTCAGATGATGTC
------------AAGAGAGCAGTCTATTGACAGT 	81
------------AAGAGAGCAGTCTATTGACAG 	3
------------AAGAGAGCAGTCTATTGACA 	1
-------------AGAGAGCAGTCTATTGACAGT 	1
----------------------------------CGGTTACTCGAAATCTTTAC 	2
------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA 	188
------------------------------------------------------TGTCATGGAGGCGCTCTCTTC 	5
------------------------------------------------------TGTCATGGAGGCGCTCTCTT 	2
------------------------------------------------------TGTCATGGAGGCGCTCTCT 	1

Overlaps with: MNEST038284
Overlaps with miRBase pre-miRNAs: cel-mir-47
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TGTCATGGAGGCGCTCTCTTCA AAGAGAGCAGTCTATTGACAGT down 2 2


Secondary structure

CGACTGAAACTGAAGAGAGCAGTCTATTGACAGTCGGTTACTCGAAATCTTTACTGTCATGGAGGCGCTCTCTTCAGATGATGTC
------------AAGAGAGCAGTCTATTGACAGT 	21
------------AAGAGAGCAGTCTATTGACAG 	3
------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA 	321
------------------------------------------------------TGTCATGGAGGCGCTCTCTTC 	23
------------------------------------------------------TGTCATGGAGGCGCTCTCTT 	7
------------------------------------------------------TGTCATGGAGGCGCTCTCT 	13

Overlaps with: MNEST038284
Overlaps with miRBase pre-miRNAs: cel-mir-47
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 TGTCATGGAGGCGCTCTCTTCA AAGAGAGCAGTCTATTGACAGT down 2 2


Secondary structure

CGACTGAAACTGAAGAGAGCAGTCTATTGACAGTCGGTTACTCGAAATCTTTACTGTCATGGAGGCGCTCTCTTCAGATGATGTC
------------AAGAGAGCAGTCTATTGACAGT 	1
------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA 	47
------------------------------------------------------TGTCATGGAGGCGCTCTCTTC 	5
------------------------------------------------------TGTCATGGAGGCGCTCTCT 	1

Overlaps with: MNEST038284
Overlaps with miRBase pre-miRNAs: cel-mir-47
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297751-9445 TGTCATGGAGGCGCTCTCTTCA AAGAGAGCAGTCTATTGACAGT down 2 2


Secondary structure

CGACTGAAACTGAAGAGAGCAGTCTATTGACAGTCGGTTACTCGAAATCTTTACTGTCATGGAGGCGCTCTCTTCAGATGATGTC
------------AAGAGAGCAGTCTATTGACAGT 	846
------------AAGAGAGCAGTCTATTGACAG 	10
------------AAGAGAGCAGTCTATTGACA 	9
-------------AGAGAGCAGTCTATTGACAGT 	6
----------------------------------CGGTTACTCGAAATCTTTAC 	1
-----------------------------------------------------CTGTCATGGAGGCGCTCTCTTCA 	5
------------------------------------------------------TGTCATGGAGGCGCTCTCTT 	47
------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA 	3364
------------------------------------------------------TGTCATGGAGGCGCTCTCT 	24
------------------------------------------------------TGTCATGGAGGCGCTCTCTTC 	146
-------------------------------------------------------GTCATGGAGGCGCTCTCTTCA 	7
--------------------------------------------------------TCATGGAGGCGCTCTCTTCA 	1
---------------------------------------------------------CATGGAGGCGCTCTCTTCA 	23

Overlaps with: MNEST038284
Overlaps with miRBase pre-miRNAs: cel-mir-47
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297752-9446 TGTCATGGAGGCGCTCTCTTCA AAGAGAGCAGTCTATTGACAGT down 2 2


Secondary structure

CGACTGAAACTGAAGAGAGCAGTCTATTGACAGTCGGTTACTCGAAATCTTTACTGTCATGGAGGCGCTCTCTTCAGATGATGTC
----------TGAAGAGAGCAGTCTATTGACAGT 	1
------------AAGAGAGCAGTCTATTGAC 	1
------------AAGAGAGCAGTCTATTGACAGT 	1026
------------AAGAGAGCAGTCTATTGACAG 	22
------------AAGAGAGCAGTCTATTGACA 	9
-------------AGAGAGCAGTCTATTGACAG 	1
-------------AGAGAGCAGTCTATTGACAGT 	5
---------------AGAGCAGTCTATTGACAGT 	3
----------------------------------CGGTTACTCGAAATCTTTAC 	1
-----------------------------------------------------CTGTCATGGAGGCGCTCTCTTCA 	4
------------------------------------------------------TGTCATGGAGGCGCTCTCTTCAG 	1
------------------------------------------------------TGTCATGGAGGCGCTCTCTTC 	159
------------------------------------------------------TGTCATGGAGGCGCTCTCTT 	70
------------------------------------------------------TGTCATGGAGGCGCTCTCTTCA 	3821
------------------------------------------------------TGTCATGGAGGCGCTCTCT 	33
-------------------------------------------------------GTCATGGAGGCGCTCTCTTCA 	2
--------------------------------------------------------TCATGGAGGCGCTCTCTTCA 	1
---------------------------------------------------------CATGGAGGCGCTCTCTTCA 	25

Overlaps with: MNEST038284
Overlaps with miRBase pre-miRNAs: cel-mir-47
HuntMi prediction: true miRNA