miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGTCATGGAGTCGCTCTCTTCA

selected species: Caenorhabditis elegans



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM297751-9445 TGTCATGGAGTCGCTCTCTTCA AAGAGAGCCGTCTATTGACAGT down 2 2


Secondary structure

GAGGTGAAGCTGAAGAGAGCCGTCTATTGACAGTTCAAGACCACGAGTCGTTGTGTGCTGTCATGGAGTCGCTCTCTTCAGATGATCCG
------------AAGAGAGCCGTCTATTGACAGTT 	5
------------AAGAGAGCCGTCTATTGACAG 	30
------------AAGAGAGCCGTCTATTGACAGT 	1370
------------AAGAGAGCCGTCTATTGACA 	5
-------------AGAGAGCCGTCTATTGACAGT 	10
-------------AGAGAGCCGTCTATTGACAG 	3
---------------AGAGCCGTCTATTGACAGT 	1
----------------------------------TCAAGACCACGAGTCGTTGTGTGC 	8
----------------------------------TCAAGACCACGAGTCGTTGTGT 	2
----------------------------------TCAAGACCACGAGTCGTTGTGTG 	2
---------------------------------------ACCACGAGTCGTTGTGTGC 	1
---------------------------------------------------------CTGTCATGGAGTCGCTCTCTTCA 	5
----------------------------------------------------------TGTCATGGAGTCGCTCTCTTC 	88
----------------------------------------------------------TGTCATGGAGTCGCTCTCTT 	18
----------------------------------------------------------TGTCATGGAGTCGCTCTCT 	8
----------------------------------------------------------TGTCATGGAGTCGCTCTCTTCA 	6547
-----------------------------------------------------------GTCATGGAGTCGCTCTCTTCA 	2
------------------------------------------------------------TCATGGAGTCGCTCTCTTCA 	13
-------------------------------------------------------------CATGGAGTCGCTCTCTTCA 	28


Overlaps with: MNEST038283
Overlaps with miRBase pre-miRNAs: cel-mir-46
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297752-9446 TGTCATGGAGTCGCTCTCTTCA AAGAGAGCCGTCTATTGACAGT down 2 2


Secondary structure

GAGGTGAAGCTGAAGAGAGCCGTCTATTGACAGTTCAAGACCACGAGTCGTTGTGTGCTGTCATGGAGTCGCTCTCTTCAGATGATCCG
------------AAGAGAGCCGTCTATTGACA 	12
------------AAGAGAGCCGTCTATTGACAGTT 	8
------------AAGAGAGCCGTCTATTGACAG 	22
------------AAGAGAGCCGTCTATTGACAGT 	1209
------------AAGAGAGCCGTCTATTGAC 	6
-------------AGAGAGCCGTCTATTGACAGT 	9
--------------GAGAGCCGTCTATTGACAGT 	1
----------------------------------TCAAGACCACGAGTCGTTGTGTGC 	4
----------------------------------TCAAGACCACGAGTCGTTGTGTG 	1
---------------------------------------------------------CTGTCATGGAGTCGCTCTCTTCA 	9
----------------------------------------------------------TGTCATGGAGTCGCTCTCTT 	25
----------------------------------------------------------TGTCATGGAGTCGCTCTCT 	9
----------------------------------------------------------TGTCATGGAGTCGCTCTCTTC 	89
----------------------------------------------------------TGTCATGGAGTCGCTCTCTTCA 	6021
-----------------------------------------------------------GTCATGGAGTCGCTCTCTTC 	1
-----------------------------------------------------------GTCATGGAGTCGCTCTCTTCA 	1
------------------------------------------------------------TCATGGAGTCGCTCTCTTCA 	1
-------------------------------------------------------------CATGGAGTCGCTCTCTTCA 	38


Overlaps with: MNEST038283
Overlaps with miRBase pre-miRNAs: cel-mir-46
HuntMi prediction: true miRNA