miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

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selected mature miRNA sequence: TGTCCAGTGCCGTAAATTGCAG

selected species: Drosophila melanogaster

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TGTCCAGTGCCGTAAATTGCAG	GCAATCTACGCCACTGGCTTACG	down	3	1

Secondary structure

ATCTTGGTTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGCAATCGAAAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAACGCAAACGGC
---------------------TGCAATCTACGCCACTGGCTTACG 	14
---------------------TGCAATCTACGCCACTGGCTTAC 	12
---------------------TGCAATCTACGCCACTGGCT 	2
---------------------TGCAATCTACGCCACTGGCTTA 	6
----------------------GCAATCTACGCCACTGGCTTACG 	2
-----------------------CAATCTACGCCACTGGCTTACGT 	1
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGCA 	5
------------------------------------------------------------GTGTCCAGTGCCGTAAATTG 	25
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGC 	40
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGCAG 	9
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGCAGT 	6
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGCAG 	102
-------------------------------------------------------------TGTCCAGTGCCGTAAATTG 	1
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGC 	3
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGCA 	11
--------------------------------------------------------------GTCCAGTGCCGTAAATTGCAGT 	2
--------------------------------------------------------------GTCCAGTGCCGTAAATTGCA 	1

Overlaps with: MNEST036531 MNEST036532
Overlaps with miRBase pre-miRNAs: dme-mir-978
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM360262-14327	TGTCCAGTGCCGTAAATTGCAG	GCAATCTACGCCACTGGCTTACG	down	3	1

Secondary structure

ATCTTGGTTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGCAATCGAAAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAACGCAAACGGC
---------------------TGCAATCTACGCCACTGGCTTAC 	1
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGCA 	7
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGC 	3
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGCAG 	3
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGCAG 	13
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGCA 	2

Overlaps with: MNEST036531 MNEST036532
Overlaps with miRBase pre-miRNAs: dme-mir-978
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM360260-14326	TGTCCAGTGCCGTAAATTGCAG	GCAATCTACGCCACTGGCTTACG	down	3	1

Secondary structure

ATCTTGGTTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGCAATCGAAAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAACGCAAACGGC
---------------------TGCAATCTACGCCACTGGCTTAC 	1
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGCA 	1
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGC 	2
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGCAG 	1
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGCAG 	7
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGCA 	2
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGC 	1

Overlaps with: MNEST036531 MNEST036532
Overlaps with miRBase pre-miRNAs: dme-mir-978
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM399110-16285	TGTCCAGTGCCGTAAATTGCAG	GCAATCTACGCCACTGGCTTACG	down	3	1

Secondary structure

ATCTTGGTTGGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTTGCAATCGAAAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAACGCAAACGGC
---------------------TGCAATCTACGCCACTGGCTTACG 	5
------------------------------------------------------------GTGTCCAGTGCCGTAAATTGC 	3
-------------------------------------------------------------TGTCCAGTGCCGTAAATTGCAG 	8

Overlaps with: MNEST036531 MNEST036532
Overlaps with miRBase pre-miRNAs: dme-mir-978
HuntMi prediction: true miRNA