miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGTCGAACCGCGGTTGTTCGA

selected species: Oryza sativa

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM520638-18676	TGTCGAACCGCGGTTGTTCGA	GAACAACTGCGGTTCGACAGG	down	0	0

Secondary structure

TGGTTCGACAGGGTACCCTATCGAACAACTGCGGTTCGACAGGTACCTATTGGACTGCCACACTTTGACAGGCTAGTTGGTCCAAGAAAAAAAAAAGTACTTGCTACAGTACCTGGCAGGGACATATCCAACGGGCAGTGTTCGATAGGGGCGTGGCTACAGTGACACTACAATGTTTTTTTCTATTTTTAAAATTATTTAATCACATGTCGAACCGCGGTTGTTCGATAGGTACCCTGTCGAACCG
TGGTTCGACAGGGTACCCTATC 	1
---------AGGGTACCCTATCGAACAACTG 	1
----------GGGTACCCTATCGAACAACTGCGG 	1
------------------------ACAACTGCGGTTCGACAGGT 	2
---------------------------ACTGCGGTTCGACAGGTACCT 	1
----------------------------------------AGGTACCTATTGGACTGCCACACT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCACATGTCGAACCGCGGTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGAACCGCGGTTGTTCGA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGAACCGCGGTTGTTCGA 	12
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCGCGGTTGTTCGATA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCGCGGTTGTTCGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCGGTTGTTCGATAGGTA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCGGTTGTTCGATAGGTACC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCGGTTGTTCGATAGGT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGGTTGTTCGATAGGTACCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCGATAGGTACCCTGTCGAACC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM520640-18679	TGTCGAACCGCGGTTGTTCGA	GAACAACTGCGGTTCGACAGG	down	0	0

Secondary structure

TGGTTCGACAGGGTACCCTATCGAACAACTGCGGTTCGACAGGTACCTATTGGACTGCCACACTTTGACAGGCTAGTTGGTCCAAGAAAAAAAAAAGTACTTGCTACAGTACCTGGCAGGGACATATCCAACGGGCAGTGTTCGATAGGGGCGTGGCTACAGTGACACTACAATGTTTTTTTCTATTTTTAAAATTATTTAATCACATGTCGAACCGCGGTTGTTCGATAGGTACCCTGTCGAACCG
---------AGGGTACCCTATCGAACAACTGCG 	4
----------GGGTACCCTATCGAACAACTGCGG 	1
------------GTACCCTATCGAACAACTGCG 	1
------------------TATCGAACAACTGCGGTTCGACAGG 	1
-------------------ATCGAACAACTGCGGTTCGACAGG 	1
-----------------------------------TCGACAGGTACCTATTGGACTGCC 	1
----------------------------------------AGGTACCTATTGGACTGCCACACT 	1
-----------------------------------------------------------------------------------------------------------------------------ATCCAACGGGCAGTGTTCGATAGG 	1
-------------------------------------------------------------------------------------------------------------------------------------GGCAGTGTTCGATAGGGGCGTGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCACATGTCGAACCGCGG 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGAACCGCGGTTGTTCGA 	15
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGAACCGCGGTTGTTCGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAACCGCGGTTGTTCGA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACCGCGGTTGTTCGATAGGTA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGGTTGTTCGATAGGTACCCT 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM520639-18678	TGTCGAACCGCGGTTGTTCGA	GAACAACTGCGGTTCGACAGG	down	0	0

Secondary structure

TGGTTCGACAGGGTACCCTATCGAACAACTGCGGTTCGACAGGTACCTATTGGACTGCCACACTTTGACAGGCTAGTTGGTCCAAGAAAAAAAAAAGTACTTGCTACAGTACCTGGCAGGGACATATCCAACGGGCAGTGTTCGATAGGGGCGTGGCTACAGTGACACTACAATGTTTTTTTCTATTTTTAAAATTATTTAATCACATGTCGAACCGCGGTTGTTCGATAGGTACCCTGTCGAACCG
--------CAGGGTACCCTATCGAACAACTGC 	2
------------GTACCCTATCGAACAACTGCGGTT 	4
------------------------ACAACTGCGGTTCGACAGGTACCT 	2
--------------------------------GGTTCGACAGGTACCTATTGGACT 	2
-----------------------------------------------------------------------------------------------------------------------------ATCCAACGGGCAGTGTTCGATAGG 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGAACCGCGGTTGTTCGA 	5

HuntMi prediction: true miRNA