miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGTCTTTTTCCGCTTACTGGCG

selected species: Drosophila melanogaster

16 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM360257-14325	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGTT 	1
---------------------TGTCTTTTTCCGCTTACTGGCG 	12
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399107-16288	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
--------------------TTGTCTTTTTCCGCTTACTGGC 	1
---------------------TGTCTTTTTCCGCTTACTGGCGTT 	3
---------------------TGTCTTTTTCCGCTTACTGGCGT 	127
---------------------TGTCTTTTTCCGCTTACTGGCG 	1388
---------------------TGTCTTTTTCCGCTTACTGG 	65
---------------------TGTCTTTTTCCGCTTACTGGC 	174
---------------------TGTCTTTTTCCGCTTACTG 	6
-----------------------TCTTTTTCCGCTTACTGGCGT 	1
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	2
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	21
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	3
------------------------------------------------------------CAGGAAAGGGAAAAAGGCGT 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399106-16287	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGTT 	1
---------------------TGTCTTTTTCCGCTTACTGGCGT 	53
---------------------TGTCTTTTTCCGCTTACTGGCG 	498
---------------------TGTCTTTTTCCGCTTACTGG 	38
---------------------TGTCTTTTTCCGCTTACTGGC 	114
---------------------TGTCTTTTTCCGCTTACTG 	3
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	3
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	35
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	5
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTAT 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM466487_wt_total	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
--------------------TTGTCTTTTTCCGCTTACTGG 	1
---------------------TGTCTTTTTCCGCTTACTGGCGT 	79
---------------------TGTCTTTTTCCGCTTACTGGCG 	547
---------------------TGTCTTTTTCCGCTTACTGG 	36
---------------------TGTCTTTTTCCGCTTACTG 	2
---------------------TGTCTTTTTCCGCTTACTGGCGTT 	4
---------------------TGTCTTTTTCCGCTTACTGGC 	179
----------------------GTCTTTTTCCGCTTACTGG 	1
----------------------GTCTTTTTCCGCTTACTGGC 	1
----------------------GTCTTTTTCCGCTTACTGGCG 	5
----------------------GTCTTTTTCCGCTTACTGGCGT 	2
------------------------CTTTTTCCGCTTACTGGCG 	2
---------------------------------------------------------CGACAGGAAAGGGAAAAAGGCGTA 	1
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGT 	1
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	2
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	20
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCG 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM399105-16286	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	5
---------------------TGTCTTTTTCCGCTTACTGGCG 	32
---------------------TGTCTTTTTCCGCTTACTGGC 	4
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360262-14327	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	33
---------------------TGTCTTTTTCCGCTTACTGGCG 	277
---------------------TGTCTTTTTCCGCTTACTGG 	11
---------------------TGTCTTTTTCCGCTTACTGGC 	41
---------------------TGTCTTTTTCCGCTTACTG 	1
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGT 	1
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	3
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	83
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGC 	2
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	3
------------------------------------------------------------CAGGAAAGGGAAAAAGGCGTA 	2

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM360256-14324	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	4
---------------------TGTCTTTTTCCGCTTACTGGCG 	38
---------------------TGTCTTTTTCCGCTTACTG 	2
------------------------CTTTTTCCGCTTACTGGCG 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	7
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTAT 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM466494_r2d2_heterozygotes_untreated	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	57
---------------------TGTCTTTTTCCGCTTACTGGCG 	371
---------------------TGTCTTTTTCCGCTTACTGG 	8
---------------------TGTCTTTTTCCGCTTACTG 	2
---------------------TGTCTTTTTCCGCTTACTGGCGTT 	5
---------------------TGTCTTTTTCCGCTTACTGGC 	131
----------------------GTCTTTTTCCGCTTACTGGC 	2
----------------------GTCTTTTTCCGCTTACTGGCG 	3
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	11

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM466496_r2d2_homozygotes_untreated	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	58
---------------------TGTCTTTTTCCGCTTACTGGCG 	571
---------------------TGTCTTTTTCCGCTTACTGG 	10
---------------------TGTCTTTTTCCGCTTACTG 	1
---------------------TGTCTTTTTCCGCTTACTGGCGTTT 	1
---------------------TGTCTTTTTCCGCTTACTGGC 	130
----------------------GTCTTTTTCCGCTTACTGGC 	1
----------------------GTCTTTTTCCGCTTACTGGCG 	7
----------------------GTCTTTTTCCGCTTACTGGCGT 	3
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGT 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	28

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM286605-9793	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCG 	16
---------------------TGTCTTTTTCCGCTTACTGGC 	3
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	3

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM360260-14326	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	5
---------------------TGTCTTTTTCCGCTTACTGGCG 	110
---------------------TGTCTTTTTCCGCTTACTGG 	4
---------------------TGTCTTTTTCCGCTTACTGGC 	33
---------------------TGTCTTTTTCCGCTTACTG 	1
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCG 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	48
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	2
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTAT 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM322543-14323	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	26
---------------------TGTCTTTTTCCGCTTACTGG 	41
---------------------TGTCTTTTTCCGCTTACTGGC 	83
---------------------TGTCTTTTTCCGCTTACTGGCG 	457
---------------------TGTCTTTTTCCGCTTACTG 	3
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	26
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	3
------------------------------------------------------------CAGGAAAGGGAAAAAGGCGTA 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM286604-9792	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	26
---------------------TGTCTTTTTCCGCTTACTGGCG 	173
---------------------TGTCTTTTTCCGCTTACTGG 	9
---------------------TGTCTTTTTCCGCTTACTGGC 	42
---------------------TGTCTTTTTCCGCTTACTG 	2
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	5
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTAT 	3
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	30
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Drosophila melanogaster	GSM322208-14317	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGT 	11
---------------------TGTCTTTTTCCGCTTACTGGCG 	86
---------------------TGTCTTTTTCCGCTTACTGG 	18
---------------------TGTCTTTTTCCGCTTACTGGC 	15
---------------------TGTCTTTTTCCGCTTACTG 	1
---------------------------------------------------------CGACAGGAAAGGGAAAAAGGCGT 	1
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	5
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	43
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	5

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Drosophila melanogaster	GSM399110-16285	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCG 	7
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	7

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Drosophila melanogaster	GSM466492_dcr-2_homozygotes_untreated	TGTCTTTTTCCGCTTACTGGCG	ACAGGAAAGGGAAAAAGGCGTA	up	2	2

Secondary structure

ATACACAAATTCTAGTCGATTTGTCTTTTTCCGCTTACTGGCGTTTCAATTCCACAACGACAGGAAAGGGAAAAAGGCGTATTTACTATGAGTTTGCTC
---------------------TGTCTTTTTCCGCTTACTGGCGTT 	3
---------------------TGTCTTTTTCCGCTTACTGGCGT 	73
---------------------TGTCTTTTTCCGCTTACTGG 	30
---------------------TGTCTTTTTCCGCTTACTGGCG 	471
---------------------TGTCTTTTTCCGCTTACTGGC 	101
---------------------TGTCTTTTTCCGCTTACTG 	4
----------------------GTCTTTTTCCGCTTACTGGCG 	8
----------------------GTCTTTTTCCGCTTACTGGC 	1
-----------------------TCTTTTTCCGCTTACTGGCG 	1
------------------------CTTTTTCCGCTTACTGGCG 	1
------------------------CTTTTTCCGCTTACTGGCGT 	1
----------------------------------------------------------GACAGGAAAGGGAAAAAGGCGTA 	1
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGTA 	11
-----------------------------------------------------------ACAGGAAAGGGAAAAAGGCGT 	1

Overlaps with: MNEST036469 MNEST036470
Overlaps with miRBase pre-miRNAs: dme-mir-316
HuntMi prediction: true miRNA