miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTGACGCCGTTGACTTTTCAT

selected species: Oryza sativa



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TGTGACGCCGTTGACTTTTCAT AAAAAGTCAACGGTGTCATACA up 2 0


Secondary structure

AGATGACCATCCTAATTATGTACTACCTCATTTTCAAAATGTGTGACGCCGTTGACTTTTCATACAACGTTTGACCATTCGTCTTATTCAAAAATTTAACATAAATATGTAAAAGTATAAGTTAAGATTACATTTTATTTGATGATAAAACAAGTTACAATAAAATAAATGATATTTATATAACTTTTTTGAATAAGATGAATGGTCAAACGTTATGCAAAAAGTCAACGGTGTCATACATTTTGAAATGGAGGGAGTATATGCCACCACACTTGTCA
-------------------------------------AATGTGTGACGCCGTTGACTTTTC 	2
-----------------------------------------TGTGACGCCGTTGACTTTTCAT 	17
-----------------------------------------TGTGACGCCGTTGACTTTTCATA 	10
-------------------------------------------------------------ATACAACGTTTGACCATTCGTCT 	1
----------------------------------------------------------------CAACGTTTGACCATTCGTCTTATT 	1
------------------------------------------------------------------ACGTTTGACCATTCGTCTTAT 	1
--------------------------------------------------------------------GTTTGACCATTCGTCTTATTCAAA 	1
----------------------------------------------------------------------TTGACCATTCGTCTTATTCAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGAATAAGATGAATGGTCAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGATGAATGGTCAAACGTTAT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAAAGTCAACGGTGTCATACA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAAGTCAACGGTGTCATACAT 	1


Overlaps with: MNEST042313 MNEST049189
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM693279 TGTGACGCCGTTGACTTTTCAT AAAAAGTCAACGGTGTCATACA up 2 0


Secondary structure

AGATGACCATCCTAATTATGTACTACCTCATTTTCAAAATGTGTGACGCCGTTGACTTTTCATACAACGTTTGACCATTCGTCTTATTCAAAAATTTAACATAAATATGTAAAAGTATAAGTTAAGATTACATTTTATTTGATGATAAAACAAGTTACAATAAAATAAATGATATTTATATAACTTTTTTGAATAAGATGAATGGTCAAACGTTATGCAAAAAGTCAACGGTGTCATACATTTTGAAATGGAGGGAGTATATGCCACCACACTTGTCA
------------------------------------AAATGTGTGACGCCGTTGACTTTT 	6
-------------------------------------AATGTGTGACGCCGTTGACTTTTC 	5
--------------------------------------ATGTGTGACGCCGTTGACTTTTCA 	8
--------------------------------------ATGTGTGACGCCGTTGACTTTTC 	1
---------------------------------------TGTGTGACGCCGTTGACTTTTCAT 	1
-----------------------------------------TGTGACGCCGTTGACTTTTCATA 	38
-----------------------------------------TGTGACGCCGTTGACTTTTCAT 	71
-----------------------------------------TGTGACGCCGTTGACTTTTCA 	14
-----------------------------------------TGTGACGCCGTTGACTTTTC 	11
---------------------------------------------------TTGACTTTTCATACAACGTTTGAC 	1
-------------------------------------------------------------ATACAACGTTTGACCATTCGTCTT 	1
-------------------------------------------------------------ATACAACGTTTGACCATTC 	1
---------------------------------------------------------------ACAACGTTTGACCATTCGTCTTAT 	1
----------------------------------------------------------------CAACGTTTGACCATTCGTCTTATTC 	1
-----------------------------------------------------------------AACGTTTGACCATTCGTCTTATTC 	3
-----------------------------------------------------------------AACGTTTGACCATTCGTCTTATT 	1
------------------------------------------------------------------ACGTTTGACCATTCGTCTTATTCA 	1
---------------------------------------------------------------------TTTGACCATTCGTCTTATTCA 	2
---------------------------------------------------------------------TTTGACCATTCGTCTTATTCAAAA 	1
----------------------------------------------------------------------TTGACCATTCGTCTTATTCAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGAATAAGATGAATGGTCA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAATAAGATGAATGGTCAAAC 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATAAGATGAATGGTCAAACG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGATGAATGGTCAAACGT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGATGAATGGTCAAACG 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGATGAATGGTCAAACGT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATGAATGGTCAAACGT 	16
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATGAATGGTCAAACGTT 	8
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATGAATGGTCAAACGTTATGC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAAAGTCAACGGTGTCATACA 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAAGTCAACGGTGTCATACAT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTCAACGGTGTCATACATT 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGTGTCATACATTTTGAAATG 	1


Overlaps with: MNEST042313 MNEST049189
HuntMi prediction: true miRNA