miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGTGACTGGTTGACCAGAGGGG

selected species: Mus musculus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539855 TGTGACTGGTTGACCAGAGGGG CCTGTGGGCCACCTAGTCACCAA up 5 1


Secondary structure

CATTCAGGGTGTGTGACTGGTTGACCAGAGGGGCGTGCACTCTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTCAGC
----------GTGTGACTGGTTGACCAGAGGG 	5
----------GTGTGACTGGTTGACCAGAGG 	1
----------GTGTGACTGGTTGACCAGAGGGG 	1
-----------TGTGACTGGTTGACCAGAGGGG 	206
-----------TGTGACTGGTTGACCAGAGG 	14
-----------TGTGACTGGTTGACCAGAG 	14
-----------TGTGACTGGTTGACCAGAGGG 	57
-----------TGTGACTGGTTGACCAGAGGGGCGT 	2
-----------TGTGACTGGTTGACCAGAGGGGCG 	4


Overlaps with: MNEST031862
Overlaps with miRBase pre-miRNAs: mmu-mir-134
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539867 TGTGACTGGTTGACCAGAGGGG CCTGTGGGCCACCTAGTCACCAA up 5 1


Secondary structure

CATTCAGGGTGTGTGACTGGTTGACCAGAGGGGCGTGCACTCTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTCAGC
----------GTGTGACTGGTTGACCAGAGGGG 	3
----------GTGTGACTGGTTGACCAGAGGG 	49
----------GTGTGACTGGTTGACCAGAGG 	38
-----------TGTGACTGGTTGACCAGAGGGGCG 	9
-----------TGTGACTGGTTGACCAGAGGGGC 	20
-----------TGTGACTGGTTGACCAGAGGGG 	2921
-----------TGTGACTGGTTGACCAGAGGG 	1590
-----------TGTGACTGGTTGACCAGAGG 	584
-----------TGTGACTGGTTGACCAGAG 	69
-----------TGTGACTGGTTGACCAGAGGGGCGT 	14
------------GTGACTGGTTGACCAGAGGGG 	5
------------GTGACTGGTTGACCAGAGGG 	3
--------------------------------------------------CTGTGGGCCACCTAGTCACCA 	2
--------------------------------------------------CTGTGGGCCACCTAGTCACCAA 	2


Overlaps with: MNEST031862
Overlaps with miRBase pre-miRNAs: mmu-mir-134
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539854 TGTGACTGGTTGACCAGAGGGG CCTGTGGGCCACCTAGTCACCAA up 5 1


Secondary structure

CATTCAGGGTGTGTGACTGGTTGACCAGAGGGGCGTGCACTCTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTCAGC
----------GTGTGACTGGTTGACCAGAGGG 	4
----------GTGTGACTGGTTGACCAGAGG 	1
-----------TGTGACTGGTTGACCAGAGGGG 	207
-----------TGTGACTGGTTGACCAGAGGG 	101
-----------TGTGACTGGTTGACCAGAGG 	69
-----------TGTGACTGGTTGACCAGAG 	25
-----------TGTGACTGGTTGACCAGAGGGGCGT 	1


Overlaps with: MNEST031862
Overlaps with miRBase pre-miRNAs: mmu-mir-134
HuntMi prediction: true miRNA