miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGTGATGTGACGTAGTGGAAC

selected species: Drosophila melanogaster

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TGTGATGTGACGTAGTGGAAC	GCCACTACCTTGCAGTCACGTG	down	4	1

Secondary structure

AGTACAAAGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAAAAGACACAGGTGACACTGATCCGGATTTGGTAGTTGACAAATCCTCCATGCCGAGATTAGTTTCATTTTGCGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAGCA
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAACA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAA 	17
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAAC 	30

Overlaps with: MNEST036555 MNEST036556
Overlaps with miRBase pre-miRNAs: dme-mir-989
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	TGTGATGTGACGTAGTGGAAC	GCCACTACCTTGCAGTCACGTG	down	4	1

Secondary structure

AGTACAAAGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAAAAGACACAGGTGACACTGATCCGGATTTGGTAGTTGACAAATCCTCCATGCCGAGATTAGTTTCATTTTGCGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAGCA
---------------------GGCCACTACCTTGCAGTCAC 	2
---------------------GGCCACTACCTTGCAGTCACGT 	2
---------------------GGCCACTACCTTGCAGTCACGTG 	98
---------------------GGCCACTACCTTGCAGTCACGTGA 	23
---------------------GGCCACTACCTTGCAGTCACG 	13
----------------------------------------------------------------------------------------------------------------------------------------------ATGTGATGTGACGTAGTGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------ATGTGATGTGACGTAGTGGAACA 	1
----------------------------------------------------------------------------------------------------------------------------------------------ATGTGATGTGACGTAGTGGA 	26
----------------------------------------------------------------------------------------------------------------------------------------------ATGTGATGTGACGTAGTGGAA 	133
----------------------------------------------------------------------------------------------------------------------------------------------ATGTGATGTGACGTAGTGGAAC 	70
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGA 	682
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAACA 	797
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAACAT 	9
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAA 	5433
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAAC 	7068
------------------------------------------------------------------------------------------------------------------------------------------------GTGATGTGACGTAGTGGAAC 	3
------------------------------------------------------------------------------------------------------------------------------------------------GTGATGTGACGTAGTGGAA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------TGATGTGACGTAGTGGAAC 	4

Overlaps with: MNEST036555 MNEST036556
Overlaps with miRBase pre-miRNAs: dme-mir-989
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM466487_wt_total	TGTGATGTGACGTAGTGGAAC	GCCACTACCTTGCAGTCACGTG	down	4	1

Secondary structure

AGTACAAAGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAAAAGACACAGGTGACACTGATCCGGATTTGGTAGTTGACAAATCCTCCATGCCGAGATTAGTTTCATTTTGCGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAGCA
---------------------GGCCACTACCTTGCAGTCACGTG 	1
----------------------------------------------------------------------------------------------------------------------------------------------ATGTGATGTGACGTAGTGGAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAAC 	10
-----------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAACA 	3

Overlaps with: MNEST036555 MNEST036556
Overlaps with miRBase pre-miRNAs: dme-mir-989
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM322543-14323	TGTGATGTGACGTAGTGGAACA	GGCCACTACCTTGCAGTCACGTG	down	4	1

Secondary structure

AAGTACAAAGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAAAAGACACAGGTGACACTGATCCGGATTTGGTAGTTGACAAATCCTCCATGCCGAGATTAGTTTCATTTTGCGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAGCAA
------------------------------------------------------------------------------------------------------------------------------------------------TGTGATGTGACGTAGTGGAACA 	9

Overlaps with: MNEST036555 MNEST036556
Overlaps with miRBase pre-miRNAs: dme-mir-989
HuntMi prediction: true miRNA