miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTGGGTGGGGTGGAAAGATT

selected species: Solanum lycopersicum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TGTGGGTGGGGTGGAAAGATT TCTTTCCTACTCCTCCCATACC up 2 1


Secondary structure

GAGTATTGGGAAGTTGTTGGTTGTGGGTGGGGTGGAAAGATTTGATAAATCTAATTTTAAAGAGATTAAATCTTTCCTACTCCTCCCATACCCATGACTTCCACTAGCTT
---------------------TGTGGGTGGGGTGGAAAGATTT 	12
---------------------TGTGGGTGGGGTGGAAAGATT 	23
---------------------TGTGGGTGGGGTGGAAAGAT 	3
---------------------TGTGGGTGGGGTGGAAAGA 	1
----------------------------------------------------------------------TCTTTCCTACTCCTCCCATACC 	6
----------------------------------------------------------------------TCTTTCCTACTCCTCCCATAC 	1
------------------------------------------------------------------------TTTCCTACTCCTCCCATACC 	1

Overlaps with: MNEST041557
Overlaps with miRBase pre-miRNAs: sly-MIR5301
HuntMi prediction: true miRNA