miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTGGTATTGGTTCGGCTCATC

selected species: Vitis vinifera



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TGTGGTATTGGTTCGGCTCATC CGAGCCGAACCAATATCACTCT up 2 0


Secondary structure

TCTCTGGAGAAGTAGACATGGTGTGGTATTGGTTCGGCTCATCTTCTTTCATTCATTTTCATCGGCTCAAAGACGAGCCGAACCAATATCACTCTTGTATGCTTCTTTGCATG
---------------------TGTGGTATTGGTTCGGCTCATC 	6
-------------------------------------------------------------------------CGAGCCGAACCAATATCACTC 	1
-------------------------------------------------------------------------CGAGCCGAACCAATATCACT 	1
-------------------------------------------------------------------------CGAGCCGAACCAATATCAC 	1


Overlaps with: MNEST041686 MNEST054894
Overlaps with miRBase pre-miRNAs: vvi-MIR479
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458930-2718 TGTGGTATTGGTTCGGCTCATC CGAGCCGAACCAATATCACTCT up 2 0


Secondary structure

TCTCTGGAGAAGTAGACATGGTGTGGTATTGGTTCGGCTCATCTTCTTTCATTCATTTTCATCGGCTCAAAGACGAGCCGAACCAATATCACTCTTGTATGCTTCTTTGCATG
---------------------TGTGGTATTGGTTCGGCTCATCT 	2
---------------------TGTGGTATTGGTTCGGCTCATC 	166
---------------------TGTGGTATTGGTTCGGCTCAT 	5
---------------------TGTGGTATTGGTTCGGCTCA 	11
------------------------GGTATTGGTTCGGCTCATC 	1
-------------------------------------------------------------------------CGAGCCGAACCAATATCACTCT 	4
-------------------------------------------------------------------------CGAGCCGAACCAATATCACTC 	4
-------------------------------------------------------------------------CGAGCCGAACCAATATCACT 	2
-------------------------------------------------------------------------CGAGCCGAACCAATATCAC 	2


Overlaps with: MNEST041686 MNEST054894
Overlaps with miRBase pre-miRNAs: vvi-MIR479
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458929-2717 TGTGGTATTGGTTCGGCTCATC CGAGCCGAACCAATATCACTCT up 2 0


Secondary structure

TCTCTGGAGAAGTAGACATGGTGTGGTATTGGTTCGGCTCATCTTCTTTCATTCATTTTCATCGGCTCAAAGACGAGCCGAACCAATATCACTCTTGTATGCTTCTTTGCATG
---------------------TGTGGTATTGGTTCGGCTCATCTT 	2
---------------------TGTGGTATTGGTTCGGCTCATCT 	5
---------------------TGTGGTATTGGTTCGGCTCATC 	111
---------------------TGTGGTATTGGTTCGGCTCAT 	3
---------------------TGTGGTATTGGTTCGGCTCA 	6
---------------------TGTGGTATTGGTTCGGCTC 	1
----------------------GTGGTATTGGTTCGGCTCATCT 	2
----------------------GTGGTATTGGTTCGGCTCATC 	1
-------------------------------------------------------------------------CGAGCCGAACCAATATCACTCT 	1
-------------------------------------------------------------------------CGAGCCGAACCAATATCACTC 	13
-------------------------------------------------------------------------CGAGCCGAACCAATATCAC 	1


Overlaps with: MNEST041686 MNEST054894
Overlaps with miRBase pre-miRNAs: vvi-MIR479
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458928-2716 TGTGGTATTGGTTCGGCTCATC CGAGCCGAACCAATATCACTCT up 2 0


Secondary structure

TCTCTGGAGAAGTAGACATGGTGTGGTATTGGTTCGGCTCATCTTCTTTCATTCATTTTCATCGGCTCAAAGACGAGCCGAACCAATATCACTCTTGTATGCTTCTTTGCATG
------------------TGGTGTGGTATTGGTTCGGCTC 	1
------------------TGGTGTGGTATTGGTTCGGC 	1
---------------------TGTGGTATTGGTTCGGCTCATCTT 	1
---------------------TGTGGTATTGGTTCGGCTCATCT 	21
---------------------TGTGGTATTGGTTCGGCTCATC 	278
---------------------TGTGGTATTGGTTCGGCTCAT 	1
---------------------TGTGGTATTGGTTCGGCTCA 	14
---------------------TGTGGTATTGGTTCGGCTC 	2
----------------------GTGGTATTGGTTCGGCTCATCT 	2
----------------------GTGGTATTGGTTCGGCTCATC 	4
-----------------------------------------------------CATTTTCATCGGCTCAAAGAC 	1
-------------------------------------------------------------------------CGAGCCGAACCAATATCACTCT 	1
-------------------------------------------------------------------------CGAGCCGAACCAATATCACTC 	13
-------------------------------------------------------------------------CGAGCCGAACCAATATCACT 	1
-------------------------------------------------------------------------CGAGCCGAACCAATATCAC 	1


Overlaps with: MNEST041686 MNEST054894
Overlaps with miRBase pre-miRNAs: vvi-MIR479
HuntMi prediction: true miRNA