miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGTGTTCTCAGGTCACCCCTG

selected species: Arabidopsis thaliana

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM366866	TGTGTTCTCAGGTCACCCCTG	GGGTTGATATGAGAACACACG	down	2	0

Secondary structure

TCAATATATCATGAAGGTAGTGGATCTCGACAGGGTTGATATGAGAACACACGAGTAATCAACGGCTGTAATGACGCTACGTCATTGTTACAGCTCTCGTTTTCATGTGTTCTCAGGTCACCCCTGCTGAGCTCTTTCTCTACCGTCCATCTTTT
-----------TGAAGGTAGTGGATCTCGAC 	1
------------------------TCTCGACAGGGTTGATATGAGAAC 	2
--------------------------TCGACAGGGTTGATATGAGAA 	2
-------------------------------AGGGTTGATATGAGAACACA 	2
-------------------------------AGGGTTGATATGAGAACACAC 	2
-------------------------------AGGGTTGATATGAGAACACACGAG 	2
--------------------------------GGGTTGATATGAGAACACAC 	1
--------------------------------GGGTTGATATGAGAACACA 	15
--------------------------------GGGTTGATATGAGAACACACG 	12
--------------------------------GGGTTGATATGAGAACACACGAG 	1
---------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCTG 	331
---------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCT 	14
-------------------------------------------------------------------------------------------------------------TTCTCAGGTCACCCCTGCTGA 	1
---------------------------------------------------------------------------------------------------------------CTCAGGTCACCCCTGCTGAGCT 	1

Overlaps with: MNEST040090 MNEST047013
Overlaps with miRBase pre-miRNAs: ath-MIR398b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM366866	TGTGTTCTCAGGTCACCCCTG	GGGTTGATATGAGAACACACG	down	2	0

Secondary structure

TTAGAAGATAGATAAATATTGTTAAGGTAGTGGATCTCGACAGGGTTGATATGAGAACACACGAGCAATCAACGGCTATAACGACGCTACGTCATTGTTACAGCTCTCGTTTCATGTGTTCTCAGGTCACCCCTGCTGAGCTCTTTCTCTACCGTCCATGTTTTATCAACGCCG
----------------------------------TCTCGACAGGGTTGATATGAGAAC 	2
------------------------------------TCGACAGGGTTGATATGAGAA 	2
-----------------------------------------AGGGTTGATATGAGAACACA 	2
-----------------------------------------AGGGTTGATATGAGAACACAC 	2
-----------------------------------------AGGGTTGATATGAGAACACACGAG 	2
------------------------------------------GGGTTGATATGAGAACACAC 	1
------------------------------------------GGGTTGATATGAGAACACA 	15
------------------------------------------GGGTTGATATGAGAACACACG 	12
------------------------------------------GGGTTGATATGAGAACACACGAG 	1
------------------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCTG 	331
------------------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCT 	14
----------------------------------------------------------------------------------------------------------------------TTCTCAGGTCACCCCTGCTGA 	1
------------------------------------------------------------------------------------------------------------------------CTCAGGTCACCCCTGCTGAGCT 	1

Overlaps with: MNEST040091 MNEST047014
Overlaps with miRBase pre-miRNAs: ath-MIR398c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM518432-13544	TGTGTTCTCAGGTCACCCCTG	GGGTTGATATGAGAACACACG	down	2	0

Secondary structure

TCAATATATCATGAAGGTAGTGGATCTCGACAGGGTTGATATGAGAACACACGAGTAATCAACGGCTGTAATGACGCTACGTCATTGTTACAGCTCTCGTTTTCATGTGTTCTCAGGTCACCCCTGCTGAGCTCTTTCTCTACCGTCCATCTTTT
---------CATGAAGGTAGTGGATCTCGAC 	1
------------------AGTGGATCTCGACAGGGTTGA 	10
------------------AGTGGATCTCGACAGGGTTGAT 	1
------------------AGTGGATCTCGACAGGGTTG 	1
------------------AGTGGATCTCGACAGGGTT 	1
-------------------GTGGATCTCGACAGGGTTGATATG 	3
------------------------TCTCGACAGGGTTGATATGAGA 	1
------------------------TCTCGACAGGGTTGATATGAGAAC 	1
--------------------------TCGACAGGGTTGATATGAGAA 	2
----------------------------GACAGGGTTGATATGAGAACA 	1
-----------------------------ACAGGGTTGATATGAGAACAC 	1
-------------------------------AGGGTTGATATGAGAACACAC 	4
--------------------------------GGGTTGATATGAGAACACACG 	77
--------------------------------GGGTTGATATGAGAACACAC 	7
--------------------------------GGGTTGATATGAGAACACA 	45
-------------------------------------------------------------------------------------------------------CATGTGTTCTCAGGTCACCCCTG 	1
-------------------------------------------------------------------------------------------------------CATGTGTTCTCAGGTCACCCCTGC 	1
--------------------------------------------------------------------------------------------------------ATGTGTTCTCAGGTCACCCCTG 	1
---------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCTG 	812
---------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCC 	3
---------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCTGC 	3
---------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCT 	13
----------------------------------------------------------------------------------------------------------GTGTTCTCAGGTCACCCCTGC 	2
-----------------------------------------------------------------------------------------------------------TGTTCTCAGGTCACCCCTG 	1
-------------------------------------------------------------------------------------------------------------------GGTCACCCCTGCTGAGCTCTTTCTC 	2
---------------------------------------------------------------------------------------------------------------------TCACCCCTGCTGAGCTCTTTC 	1
-----------------------------------------------------------------------------------------------------------------------ACCCCTGCTGAGCTCTTTCTCTAC 	1
-----------------------------------------------------------------------------------------------------------------------ACCCCTGCTGAGCTCTTTCTCTA 	1
--------------------------------------------------------------------------------------------------------------------------CCTGCTGAGCTCTTTCTCTAC 	2

Overlaps with: MNEST040090 MNEST047013
Overlaps with miRBase pre-miRNAs: ath-MIR398b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM518432-13544	TGTGTTCTCAGGTCACCCCTG	GGGTTGATATGAGAACACACG	down	2	0

Secondary structure

TTAGAAGATAGATAAATATTGTTAAGGTAGTGGATCTCGACAGGGTTGATATGAGAACACACGAGCAATCAACGGCTATAACGACGCTACGTCATTGTTACAGCTCTCGTTTCATGTGTTCTCAGGTCACCCCTGCTGAGCTCTTTCTCTACCGTCCATGTTTTATCAACGCCG
--------------------GTTAAGGTAGTGGATCTCGAC 	1
----------------------------AGTGGATCTCGACAGGGTTGA 	10
----------------------------AGTGGATCTCGACAGGGTTGAT 	1
----------------------------AGTGGATCTCGACAGGGTTG 	1
----------------------------AGTGGATCTCGACAGGGTT 	1
-----------------------------GTGGATCTCGACAGGGTTGATATG 	3
----------------------------------TCTCGACAGGGTTGATATGAGA 	1
----------------------------------TCTCGACAGGGTTGATATGAGAAC 	1
------------------------------------TCGACAGGGTTGATATGAGAA 	2
--------------------------------------GACAGGGTTGATATGAGAACA 	1
---------------------------------------ACAGGGTTGATATGAGAACAC 	1
-----------------------------------------AGGGTTGATATGAGAACACAC 	4
------------------------------------------GGGTTGATATGAGAACACACG 	77
------------------------------------------GGGTTGATATGAGAACACAC 	7
------------------------------------------GGGTTGATATGAGAACACA 	45
---------------------------------------------------------------------------------------------------ACAGCTCTCGTTTCATGTGTT 	1
----------------------------------------------------------------------------------------------------------------CATGTGTTCTCAGGTCACCCCTG 	1
----------------------------------------------------------------------------------------------------------------CATGTGTTCTCAGGTCACCCCTGC 	1
-----------------------------------------------------------------------------------------------------------------ATGTGTTCTCAGGTCACCCCTG 	1
------------------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCTG 	812
------------------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCC 	3
------------------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCTGC 	3
------------------------------------------------------------------------------------------------------------------TGTGTTCTCAGGTCACCCCT 	13
-------------------------------------------------------------------------------------------------------------------GTGTTCTCAGGTCACCCCTGC 	2
--------------------------------------------------------------------------------------------------------------------TGTTCTCAGGTCACCCCTG 	1
----------------------------------------------------------------------------------------------------------------------------GGTCACCCCTGCTGAGCTCTTTCTC 	2
------------------------------------------------------------------------------------------------------------------------------TCACCCCTGCTGAGCTCTTTC 	1
--------------------------------------------------------------------------------------------------------------------------------ACCCCTGCTGAGCTCTTTCTCTAC 	1
--------------------------------------------------------------------------------------------------------------------------------ACCCCTGCTGAGCTCTTTCTCTA 	1
-----------------------------------------------------------------------------------------------------------------------------------CCTGCTGAGCTCTTTCTCTAC 	2

Overlaps with: MNEST040091 MNEST047014
Overlaps with miRBase pre-miRNAs: ath-MIR398c
HuntMi prediction: true miRNA