miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTGTTCTCAGGTCGCCCCTG

selected species: Brachypodium distachyon



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TGTGTTCTCAGGTCGCCCCTG GGGTCGAATTGGGAACACATG down 2 0


Secondary structure

CACATGCGAGGAAGTTCCTGCAGGGTCGAATTGGGAACACATGAGATGGATGGTCCGCTGAGCTCTGAGCTCGAGCTCGGCCATGTGTTCTCAGGTCGCCCCTGTTGGGTCTTCCGTGCCATG
------------------TGCAGGGTCGAATTGGGAACA 	2
---------------------AGGGTCGAATTGGGAACACAT 	5
---------------------AGGGTCGAATTGGGAACACA 	1
----------------------GGGTCGAATTGGGAACACATG 	1
-----------------------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCTG 	7
---------------------------------------------------------------------------------------TTCTCAGGTCGCCCCTGTTGG 	3

Overlaps with: MNEST041801
Overlaps with miRBase pre-miRNAs: bdi-MIR398a
HuntMi prediction: true miRNA