miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTGTTCTCAGGTCGCCCCTG

selected species: Oryza sativa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM520638-18676 TGTGTTCTCAGGTCGCCCCTG GGGGCGAGCTGGGAACACACG down 1 0


Secondary structure

GGAACGCGAGGGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCTCTGGTTGAT
-------------GTTCCTACAGGGGCGAGCTGGG 	1
----------------------GGGGCGAGCTGGGAACACACG 	165
----------------------GGGGCGAGCTGGGAACACACGGTGA 	1
----------------------GGGGCGAGCTGGGAACACACGG 	2
----------------------GGGGCGAGCTGGGAACACAC 	6
----------------------GGGGCGAGCTGGGAACACACGGT 	1
----------------------GGGGCGAGCTGGGAACACA 	7
-----------------------GGGCGAGCTGGGAACACACGG 	17
-----------------------GGGCGAGCTGGGAACACACG 	1
------------------------GGCGAGCTGGGAACACACGGT 	2
------------------------GGCGAGCTGGGAACACACG 	1
------------------------GGCGAGCTGGGAACACACGG 	1
-------------------------GCGAGCTGGGAACACACGG 	1
--------------------------CGAGCTGGGAACACACGGTGA 	1
---------------------------------------------------------------TTCGTGTGTTCTCAGGTCGCC 	3
-----------------------------------------------------------------CGTGTGTTCTCAGGTCGCCCC 	2
------------------------------------------------------------------GTGTGTTCTCAGGTCGCCCCT 	12
------------------------------------------------------------------GTGTGTTCTCAGGTCGCCCCTG 	1
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCTG 	271
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCT 	15
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCC 	1

Overlaps with: MNEST042040 MNEST048963
Overlaps with miRBase pre-miRNAs: osa-MIR398b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520640-18679 TGTGTTCTCAGGTCGCCCCTG GGGGCGAGCTGGGAACACACG down 1 0


Secondary structure

GGAACGCGAGGGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCTCTGGTTGAT
----------------------GGGGCGAGCTGGGAACACA 	1
----------------------GGGGCGAGCTGGGAACACACG 	122
----------------------GGGGCGAGCTGGGAACACACGGTG 	1
----------------------GGGGCGAGCTGGGAACACACGG 	2
----------------------GGGGCGAGCTGGGAACACAC 	2
----------------------GGGGCGAGCTGGGAACACACGGT 	2
-----------------------GGGCGAGCTGGGAACACACGG 	23
-----------------------GGGCGAGCTGGGAACACACG 	3
-----------------------GGGCGAGCTGGGAACACACGGTG 	1
------------------------GGCGAGCTGGGAACACACGGT 	3
------------------------GGCGAGCTGGGAACACACG 	1
------------------------GGCGAGCTGGGAACACACGG 	1
-----------------------------------------------------------------CGTGTGTTCTCAGGTCGCCCCT 	1
------------------------------------------------------------------GTGTGTTCTCAGGTCGCCCCT 	4
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCTG 	239
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCT 	6

Overlaps with: MNEST042040 MNEST048963
Overlaps with miRBase pre-miRNAs: osa-MIR398b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520636-18672 TGTGTTCTCAGGTCGCCCCTG GGGGCGAGCTGGGAACACACG down 1 0


Secondary structure

GGAACGCGAGGGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCTCTGGTTGAT
----------------------GGGGCGAGCTGGGAACACACGGTG 	1
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCTG 	17

Overlaps with: MNEST042040 MNEST048963
Overlaps with miRBase pre-miRNAs: osa-MIR398b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520635-18669 TGTGTTCTCAGGTCGCCCCTG GGGGCGAGCTGGGAACACACG down 1 0


Secondary structure

GGAACGCGAGGGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCTCTGGTTGAT
-----------GAGTTCCTACAGGGGCGAGCTGGG 	1
-------------------ACAGGGGCGAGCTGGGAACACACG 	1
---------------------AGGGGCGAGCTGGGAACACACGGT 	1
---------------------AGGGGCGAGCTGGGAACACACGGTG 	1
----------------------GGGGCGAGCTGGGAACACACG 	5
----------------------GGGGCGAGCTGGGAACACACGGTG 	4
-----------------------GGGCGAGCTGGGAACACACGG 	2
-----------------------GGGCGAGCTGGGAACACACGGTG 	1
------------------------GGCGAGCTGGGAACACACGGTG 	1
------------------------GGCGAGCTGGGAACACACGGTGA 	1
-------------------------GCGAGCTGGGAACACACGGTGATG 	1
----------------------------AGCTGGGAACACACGGTGATGAGG 	1
-----------------------------------------------------GGTCTGGTCTTTCGTGTGTTCTCA 	1
----------------------------------------------------------------TCGTGTGTTCTCAGGTCGCCCCTG 	1
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCTG 	17

Overlaps with: MNEST042040 MNEST048963
Overlaps with miRBase pre-miRNAs: osa-MIR398b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520637-18674 TGTGTTCTCAGGTCGCCCCTG GGGGCGAGCTGGGAACACACG down 1 0


Secondary structure

GGAACGCGAGGGAGTTCCTACAGGGGCGAGCTGGGAACACACGGTGATGAGGCGGTCTGGTCTTTCGTGTGTTCTCAGGTCGCCCCTGCCGGGACTCTCTGGTTGAT
-------------GTTCCTACAGGGGCGAGCTGG 	1
--------------TTCCTACAGGGGCGAGCTGGGA 	1
---------------TCCTACAGGGGCGAGCTGGGAA 	1
-------------------ACAGGGGCGAGCTGGGAACACACG 	1
----------------------GGGGCGAGCTGGGAACACA 	1
----------------------GGGGCGAGCTGGGAACACACG 	88
----------------------GGGGCGAGCTGGGAACACACGGTG 	13
----------------------GGGGCGAGCTGGGAACACAC 	1
----------------------GGGGCGAGCTGGGAACACACGGT 	1
-----------------------GGGCGAGCTGGGAACACACGG 	13
-----------------------GGGCGAGCTGGGAACACACG 	2
------------------------GGCGAGCTGGGAACACACGGT 	1
-------------------------GCGAGCTGGGAACACACGGTG 	2
-------------------------------TGGGAACACACGGTGATGAGGCGG 	1
---------------------------------------------------------------TTCGTGTGTTCTCAGGTCGCCCCTG 	1
---------------------------------------------------------------TTCGTGTGTTCTCAGGTCGCC 	1
-----------------------------------------------------------------CGTGTGTTCTCAGGTCGCCCCT 	1
-----------------------------------------------------------------CGTGTGTTCTCAGGTCGCCCC 	2
------------------------------------------------------------------GTGTGTTCTCAGGTCGCCCCT 	12
------------------------------------------------------------------GTGTGTTCTCAGGTCGCCCCTG 	1
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCTG 	526
-------------------------------------------------------------------TGTGTTCTCAGGTCGCCCCT 	44
------------------------------------------------------------------------TCTCAGGTCGCCCCTGCCGGGACT 	1

Overlaps with: MNEST042040 MNEST048963
Overlaps with miRBase pre-miRNAs: osa-MIR398b
HuntMi prediction: true miRNA