miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGTGTTCTTGTACCTGGGAAG

selected species: Physcomitrella patens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115095 TGTGTTCTTGTACCTGGGAAG TCCCAGGTACAAGAACACAGC down 0 0


Secondary structure

CAATTCTATTCTATTCTCTTCGCTGGTGGTCTTCCCAGGTACAAGAACACAGCTCACCAGCGGTCGACTACTGGTGAGCTGTGTTCTTGTACCTGGGAAGACCGCGATCTTAGAGCGGGTATCATTGCG
-----------------------------TCTTCCCAGGTACAAGAAC 	1
-------------------------------TTCCCAGGTACAAGAACACAG 	4
--------------------------------TCCCAGGTACAAGAACACAGC 	6
---------------------------------CCCAGGTACAAGAACACAGC 	1
----------------------------------CCAGGTACAAGAACACAGCT 	2
----------------------------------CCAGGTACAAGAACACAGCTCA 	5
----------------------------------CCAGGTACAAGAACACAGCTC 	6
-----------------------------------CAGGTACAAGAACACAGCTCA 	11
-----------------------------------CAGGTACAAGAACACAGCTCACC 	1
------------------------------------AGGTACAAGAACACAGCTCACCAG 	1
------------------------------------AGGTACAAGAACACAGCTCAC 	11
------------------------------------AGGTACAAGAACACAGCTCA 	9
------------------------------------AGGTACAAGAACACAGCTC 	1
---------------------------------------TACAAGAACACAGCTCACCAG 	1
-----------------------------------------------------------------------TGGTGAGCTGTGTTCTTGTAC 	2
--------------------------------------------------------------------------TGAGCTGTGTTCTTGTACCTGGG 	1
--------------------------------------------------------------------------TGAGCTGTGTTCTTGTACCTGG 	4
--------------------------------------------------------------------------TGAGCTGTGTTCTTGTACCTG 	3
---------------------------------------------------------------------------GAGCTGTGTTCTTGTACCTGGGA 	1
---------------------------------------------------------------------------GAGCTGTGTTCTTGTACCTGG 	6
----------------------------------------------------------------------------AGCTGTGTTCTTGTACCTGGGA 	7
----------------------------------------------------------------------------AGCTGTGTTCTTGTACCTGGG 	3
----------------------------------------------------------------------------AGCTGTGTTCTTGTACCTGG 	1
-----------------------------------------------------------------------------GCTGTGTTCTTGTACCTGGGAAGA 	1
-----------------------------------------------------------------------------GCTGTGTTCTTGTACCTGGGAAG 	1
-----------------------------------------------------------------------------GCTGTGTTCTTGTACCTGGGA 	6
------------------------------------------------------------------------------CTGTGTTCTTGTACCTGGGA 	1
------------------------------------------------------------------------------CTGTGTTCTTGTACCTGGGAA 	2
-------------------------------------------------------------------------------TGTGTTCTTGTACCTGGGAAG 	33
-------------------------------------------------------------------------------TGTGTTCTTGTACCTGGGA 	4
-------------------------------------------------------------------------------TGTGTTCTTGTACCTGGGAAGA 	1
---------------------------------------------------------------------------------TGTTCTTGTACCTGGGAAGAC 	1
---------------------------------------------------------------------------------TGTTCTTGTACCTGGGAAGA 	1
---------------------------------------------------------------------------------TGTTCTTGTACCTGGGAAG 	1
-----------------------------------------------------------------------------------TTCTTGTACCTGGGAAGACCG 	1
------------------------------------------------------------------------------------TCTTGTACCTGGGAAGACCG 	1


Overlaps with: MNEST039542 MNEST039543
Overlaps with miRBase pre-miRNAs: ppt-MIR900
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM115095 TGTGTTCTTGTACCTGGGAAG TCCCAGGTACAAGAACACAGC down 0 0


Secondary structure

TCGCAATGATACCCGCTCTAAGATCGCGGTCTTCCCAGGTACAAGAACACAGCTCACCAGTAGTCGACCGCTGGTGAGCTGTGTTCTTGTACCTGGGAAGACCACCAGCGAAGAGAATAGAATAGAATT
-----------------------------TCTTCCCAGGTACAAGAAC 	1
-------------------------------TTCCCAGGTACAAGAACACAG 	4
--------------------------------TCCCAGGTACAAGAACACAGC 	6
---------------------------------CCCAGGTACAAGAACACAGC 	1
----------------------------------CCAGGTACAAGAACACAGCT 	2
----------------------------------CCAGGTACAAGAACACAGCTCA 	5
----------------------------------CCAGGTACAAGAACACAGCTC 	6
-----------------------------------CAGGTACAAGAACACAGCTCA 	11
-----------------------------------CAGGTACAAGAACACAGCTCACC 	1
------------------------------------AGGTACAAGAACACAGCTCACCAG 	1
------------------------------------AGGTACAAGAACACAGCTCAC 	11
------------------------------------AGGTACAAGAACACAGCTCA 	9
------------------------------------AGGTACAAGAACACAGCTC 	1
---------------------------------------TACAAGAACACAGCTCACCAG 	1
-----------------------------------------------------------------------TGGTGAGCTGTGTTCTTGTAC 	2
--------------------------------------------------------------------------TGAGCTGTGTTCTTGTACCTGGG 	1
--------------------------------------------------------------------------TGAGCTGTGTTCTTGTACCTGG 	4
--------------------------------------------------------------------------TGAGCTGTGTTCTTGTACCTG 	3
---------------------------------------------------------------------------GAGCTGTGTTCTTGTACCTGGGA 	1
---------------------------------------------------------------------------GAGCTGTGTTCTTGTACCTGG 	6
----------------------------------------------------------------------------AGCTGTGTTCTTGTACCTGGGA 	7
----------------------------------------------------------------------------AGCTGTGTTCTTGTACCTGGG 	3
----------------------------------------------------------------------------AGCTGTGTTCTTGTACCTGG 	1
-----------------------------------------------------------------------------GCTGTGTTCTTGTACCTGGGAAGA 	1
-----------------------------------------------------------------------------GCTGTGTTCTTGTACCTGGGAAG 	1
-----------------------------------------------------------------------------GCTGTGTTCTTGTACCTGGGA 	6
------------------------------------------------------------------------------CTGTGTTCTTGTACCTGGGA 	1
------------------------------------------------------------------------------CTGTGTTCTTGTACCTGGGAA 	2
-------------------------------------------------------------------------------TGTGTTCTTGTACCTGGGAAG 	33
-------------------------------------------------------------------------------TGTGTTCTTGTACCTGGGA 	4
-------------------------------------------------------------------------------TGTGTTCTTGTACCTGGGAAGA 	1
---------------------------------------------------------------------------------TGTTCTTGTACCTGGGAAGAC 	1
---------------------------------------------------------------------------------TGTTCTTGTACCTGGGAAGA 	1
---------------------------------------------------------------------------------TGTTCTTGTACCTGGGAAG 	1


Overlaps with: MNEST039542 MNEST039543
Overlaps with miRBase pre-miRNAs: ppt-MIR900
HuntMi prediction: true miRNA