miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TGTTAACTGTAAGACTGTGTCT

selected species: Drosophila melanogaster

25 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM360257-14325	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	2
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	30
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399107-16288	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	4
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	634
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	1
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399106-16287	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	9
--------------------------------ACATAGTCATACGGTGAATGTTGTG 	1
--------------------------------ACATAGTCATACGGTGAATGTTGTGT 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	250
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM466487_wt_total	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATG 	1
--------------------------------ACATAGTCATACGGTGAAT 	4
--------------------------------ACATAGTCATACGGTGAATGTT 	122
--------------------------------ACATAGTCATACGGTGAATGT 	8
--------------------------------ACATAGTCATACGGTGAATGTTG 	6
---------------------------------CATAGTCATACGGTGAATGTT 	1
--------------------------------------------------------------------AATGTTAACTGTAAGACTGTGTCT 	3
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTC 	3
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	132
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	6
----------------------------------------------------------------------TGTTAACTGTAAGACTGTG 	5
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	53
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	126
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	21122
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	273
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTC 	1
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	18
-------------------------------------------------------------------------TAACTGTAAGACTGTGTCT 	3

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM399105-16286	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	6
--------------------------------ACATAGTCATACGGTGAATG 	1
--------------------------------ACATAGTCATACGGTGAATGT 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	5
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	4
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	392
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360262-14327	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	35
--------------------------------ACATAGTCATACGGTGAATGT 	1
--------------------------------ACATAGTCATACGGTGAATGTTG 	1
---------------------------------CATAGTCATACGGTGAATGTT 	3
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	5
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	302
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM385822-16273	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	12
--------------------------------ACATAGTCATACGGTGAATGT 	2
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTC 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	5
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	11
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	26
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	574
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	29
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGT 	1
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	2

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM360256-14324	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	1
--------------------------------ACATAGTCATACGGTGAATGT 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	48

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM466494_r2d2_heterozygotes_untreated	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAAT 	4
--------------------------------ACATAGTCATACGGTGAATGTT 	67
--------------------------------ACATAGTCATACGGTGAATGT 	13
--------------------------------ACATAGTCATACGGTGAATGTTG 	2
-------------------------------------------CGGTGAATGTTGTGTATTGGAGACCA 	2
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTC 	2
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	151
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	8
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	7
----------------------------------------------------------------------TGTTAACTGTAAGACTGTG 	4
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	71
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	2
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	8142
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	126
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTC 	3
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	1
-------------------------------------------------------------------------TAACTGTAAGACTGTGTCT 	2

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM466496_r2d2_homozygotes_untreated	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAAT 	5
--------------------------------ACATAGTCATACGGTGAATGTT 	94
--------------------------------ACATAGTCATACGGTGAATGT 	13
--------------------------------ACATAGTCATACGGTGAATGTTG 	7
--------------------------------ACATAGTCATACGGTGAATGTTGT 	1
-----------------------------------------------------------------ACCAATGTTAACTGTAAGAC 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTC 	5
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	228
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	12
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTG 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	4
----------------------------------------------------------------------TGTTAACTGTAAGACTGTG 	3
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	83
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	203
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	10399
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	202
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTC 	1
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	4

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM371638-15389	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATG 	1
--------------------------------ACATAGTCATACGGTGAATGTT 	24
--------------------------------ACATAGTCATACGGTGAATGT 	5
--------------------------------ACATAGTCATACGGTGAATGTTG 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	17
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	3
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	4
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	9
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	767
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	170
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTC 	2
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCTC 	1
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	5

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM286605-9793	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	53
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	232

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM343833-15151	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	11
--------------------------------ACATAGTCATACGGTGAATGTTGTG 	1
--------------------------------ACATAGTCATACGGTGAATG 	1
--------------------------------ACATAGTCATACGGTGAATGT 	2
--------------------------------ACATAGTCATACGGTGAATGTTG 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	5
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	9
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	632
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	1
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	11

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Drosophila melanogaster	GSM343832-15149	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	11
--------------------------------ACATAGTCATACGGTGAATGT 	3
--------------------------------ACATAGTCATACGGTGAATGTTG 	2
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	3
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	16
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	1561
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	2
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	20
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Drosophila melanogaster	GSM399100-5263	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	10
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	12
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	5
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	35
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	3935
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	8
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	262
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCTC 	1
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	7
-------------------------------------------------------------------------TAACTGTAAGACTGTGTCT 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Drosophila melanogaster	GSM360260-14326	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	17
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	2
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	152

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Drosophila melanogaster	GSM322543-14323	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	262
--------------------------------ACATAGTCATACGGTGAATGTTG 	5
---------------------------------CATAGTCATACGGTGAATGTTG 	2
---------------------------------CATAGTCATACGGTGAATGTT 	3
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	114
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	79
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	10521
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	20
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	38
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Drosophila melanogaster	GSM286607-9796	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	29
--------------------------------ACATAGTCATACGGTGAATGTTG 	7
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	167

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Drosophila melanogaster	GSM399101-5265	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	14
--------------------------------ACATAGTCATACGGTGAATGT 	2
--------------------------------ACATAGTCATACGGTGAATGTTG 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTC 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	14
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	12
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	20
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	1835
----------------------------------------------------------------------TGTTAACTGTAAGACTGTG 	2
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	11
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	156
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCTC 	1
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTC 	1
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	2

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Drosophila melanogaster	GSM286604-9792	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	8
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	8
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	260

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Drosophila melanogaster	GSM385744-16261	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	7
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	2
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTG 	4
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	8
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	28
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	828
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	26
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTC 	1
-------------------------------------------------------------------------TAACTGTAAGACTGTGTCT 	1

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Drosophila melanogaster	GSM322208-14317	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	15
---------------------------------CATAGTCATACGGTGAATGTT 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	9
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	72
----------------------------------------------------------------------TGTTAACTGTAAGACTGTG 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	8

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Drosophila melanogaster	GSM385748-16264	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAAT 	2
--------------------------------ACATAGTCATACGGTGAATGTT 	13
--------------------------------ACATAGTCATACGGTGAATGT 	2
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	10
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	1
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTC 	2
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	1
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	18
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	70
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	1642
----------------------------------------------------------------------TGTTAACTGTAAGACTGTG 	5
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	61
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTC 	2
-------------------------------------------------------------------------TAACTGTAAGACTGTGTCT 	2

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Drosophila melanogaster	GSM399110-16285	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
------------GATGCCGCTCAATTACCCCG 	4
-------------ATGCCGCTCAATTACCCCG 	7
--------------------------------ACATAGTCATACGGTGAATGTT 	58
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	8
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	3
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	534
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	6

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
25	Drosophila melanogaster	GSM466492_dcr-2_homozygotes_untreated	TGTTAACTGTAAGACTGTGTCT	ACATAGTCATACGGTGAATGTT	down	3	0

Secondary structure

CGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCC
--------------------------------ACATAGTCATACGGTGAATGTT 	57
--------------------------------ACATAGTCATACGGTGAATGTTG 	10
--------------------------------ACATAGTCATACGGTGAATG 	1
--------------------------------ACATAGTCATACGGTGAATGT 	3
---------------------------------CATAGTCATACGGTGAATGTTG 	1
----------------------------------ATAGTCATACGGTGAATGTT 	1
--------------------------------------------------------------------AATGTTAACTGTAAGACTGTGTCT 	2
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTCT 	106
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGTC 	4
---------------------------------------------------------------------ATGTTAACTGTAAGACTGTGT 	3
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCTC 	9
----------------------------------------------------------------------TGTTAACTGTAAGACTGTG 	2
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTC 	280
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGTCT 	17411
----------------------------------------------------------------------TGTTAACTGTAAGACTGTGT 	83
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTCT 	202
-----------------------------------------------------------------------GTTAACTGTAAGACTGTGTC 	1
------------------------------------------------------------------------TTAACTGTAAGACTGTGTCT 	94
-------------------------------------------------------------------------TAACTGTAAGACTGTGTCT 	22

Overlaps with: MNEST036575 MNEST036576
Overlaps with miRBase pre-miRNAs: dme-mir-999
HuntMi prediction: true miRNA