miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

selected mature miRNA sequence: TGTTCAACATATTTAGCACTCA

selected species: Drosophila melanogaster

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

AACCTATATATGTATGTACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAACTAAAAGCGG
--------------------------------AGTACTAAATATATTGCACATG 	8
----------------------------------TACTAAATATATTGCACATGTTCA 	1
----------------------------------TACTAAATATATTGCACATGTTCAT 	2
----------------------------------TACTAAATATATTGCACATGTT 	22
----------------------------------TACTAAATATATTGCACATGT 	1
----------------------------------TACTAAATATATTGCACATG 	1
------------------------------------------------------------CATGTTCAACATATTTAGCACT 	1
-------------------------------------------------------------ATGTTCAACATATTTAGCACTC 	1
-------------------------------------------------------------ATGTTCAACATATTTAGCACTCA 	1
--------------------------------------------------------------TGTTCAACATATTTAGCACTC 	1
--------------------------------------------------------------TGTTCAACATATTTAGCACTCA 	83

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399107-16288	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

ACAACAAACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAA
----------------------AGTACTAAATATATTGCACATG 	8
------------------------TACTAAATATATTGCACATGTTCA 	1
------------------------TACTAAATATATTGCACATGTTCAT 	2
------------------------TACTAAATATATTGCACATGTT 	22
------------------------TACTAAATATATTGCACATGT 	1
------------------------TACTAAATATATTGCACATG 	1
--------------------------------------------------CATGTTCAACATATTTAGCACT 	1
---------------------------------------------------ATGTTCAACATATTTAGCACTC 	1
---------------------------------------------------ATGTTCAACATATTTAGCACTCA 	1
----------------------------------------------------TGTTCAACATATTTAGCACTC 	1
----------------------------------------------------TGTTCAACATATTTAGCACTCA 	83

Overlaps with: MNEST036708 MNEST036709
Overlaps with miRBase pre-miRNAs: dme-mir-4966
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM399105-16286	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

AACCTATATATGTATGTACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAACTAAAAGCGG
--------------------------------AGTACTAAATATATTGCACATG 	7
----------------------------------TACTAAATATATTGCACATGTT 	11
----------------------------------TACTAAATATATTGCACATGT 	1
-----------------------------------ACTAAATATATTGCACATGTTCAT 	1
-----------------------------------ACTAAATATATTGCACATGTTCATG 	1
------------------------------------------------------------CATGTTCAACATATTTAGCACT 	1
-------------------------------------------------------------ATGTTCAACATATTTAGCACTC 	1
--------------------------------------------------------------TGTTCAACATATTTAGCACTC 	3
--------------------------------------------------------------TGTTCAACATATTTAGCACTCA 	94
---------------------------------------------------------------GTTCAACATATTTAGCACTCA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM399105-16286	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

ACAACAAACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAA
----------------------AGTACTAAATATATTGCACATG 	7
------------------------TACTAAATATATTGCACATGTT 	11
------------------------TACTAAATATATTGCACATGT 	1
-------------------------ACTAAATATATTGCACATGTTCAT 	1
-------------------------ACTAAATATATTGCACATGTTCATG 	1
--------------------------------------------------CATGTTCAACATATTTAGCACT 	1
---------------------------------------------------ATGTTCAACATATTTAGCACTC 	1
----------------------------------------------------TGTTCAACATATTTAGCACTC 	3
----------------------------------------------------TGTTCAACATATTTAGCACTCA 	94
-----------------------------------------------------GTTCAACATATTTAGCACTCA 	1

Overlaps with: MNEST036708 MNEST036709
Overlaps with miRBase pre-miRNAs: dme-mir-4966
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM360262-14327	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

AACCTATATATGTATGTACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAACTAAAAGCGG
----------------------------------TACTAAATATATTGCACATGTT 	1
--------------------------------------------------------------TGTTCAACATATTTAGCACTCA 	8

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360262-14327	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

ACAACAAACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAA
------------------------TACTAAATATATTGCACATGTT 	1
----------------------------------------------------TGTTCAACATATTTAGCACTCA 	8

Overlaps with: MNEST036708 MNEST036709
Overlaps with miRBase pre-miRNAs: dme-mir-4966
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM286605-9793	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

ACAACAAACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAA
----------------------AGTACTAAATATATTGCACATG 	1
----------------------------------------------------TGTTCAACATATTTAGCACTCA 	7

Overlaps with: MNEST036708 MNEST036709
Overlaps with miRBase pre-miRNAs: dme-mir-4966
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM286605-9793	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

AACCTATATATGTATGTACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAACTAAAAGCGG
--------------------------------AGTACTAAATATATTGCACATG 	1
--------------------------------------------------------------TGTTCAACATATTTAGCACTCA 	7

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM286604-9792	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

AACCTATATATGTATGTACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAACTAAAAGCGG
----------------------------------TACTAAATATATTGCACATGTTCA 	3
--------------------------------------------------------------TGTTCAACATATTTAGCACTC 	1
--------------------------------------------------------------TGTTCAACATATTTAGCACTCA 	37

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM286604-9792	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

ACAACAAACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAA
------------------------TACTAAATATATTGCACATGTTCA 	3
----------------------------------------------------TGTTCAACATATTTAGCACTC 	1
----------------------------------------------------TGTTCAACATATTTAGCACTCA 	37

Overlaps with: MNEST036708 MNEST036709
Overlaps with miRBase pre-miRNAs: dme-mir-4966
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM399110-16285	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

ACAACAAACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAA
----------------------------------------------------TGTTCAACATATTTAGCACTCA 	5

Overlaps with: MNEST036708 MNEST036709
Overlaps with miRBase pre-miRNAs: dme-mir-4966
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM399110-16285	TGTTCAACATATTTAGCACTCA	AGTACTAAATATATTGCACATG	down	4	0

Secondary structure

AACCTATATATGTATGTACTTGTCGGCACTGGAGTACTAAATATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAAAAATGAACAACTAAAAGCGG
--------------------------------------------------------------TGTTCAACATATTTAGCACTCA 	5

HuntMi prediction: true miRNA