miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTAAAGCTACCAACCGGCTTCA

selected species: Caenorhabditis elegans



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TTAAAGCTACCAACCGGCTTCA CAGTCGGTTGCAAGCTTAAATA down 4 0


Secondary structure

ATGCGGTTTTTTTTTCTACTTTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAATTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGAAAGAGCAGTTGAAAAAAGGTAAGCCTGTTTAA
------------------------------------------CAGTCGGTTGCAAGCTTAAATA 	13
------------------------------------------CAGTCGGTTGCAAGCTTAAAT 	5
------------------------------------------CAGTCGGTTGCAAGCTTAAA 	1
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCA 	44


Overlaps with: MNEST038311
Overlaps with miRBase pre-miRNAs: cel-mir-75
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TTAAAGCTACCAACCGGCTTCA CAGTCGGTTGCAAGCTTAAATA down 4 0


Secondary structure

ATGCGGTTTTTTTTTCTACTTTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAATTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGAAAGAGCAGTTGAAAAAAGGTAAGCCTGTTTAA
------------------------------------------CAGTCGGTTGCAAGCTTAAATA 	15
------------------------------------------CAGTCGGTTGCAAGCTTAAAT 	2
-------------------------------------------------------------------------------ATTAAAGCTACCAACCGGCTTCA 	1
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCA 	203
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTC 	2
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCT 	1
----------------------------------------------------------------------------------AAAGCTACCAACCGGCTTCA 	1


Overlaps with: MNEST038311
Overlaps with miRBase pre-miRNAs: cel-mir-75
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TTAAAGCTACCAACCGGCTTCA CAGTCGGTTGCAAGCTTAAATA down 4 0


Secondary structure

ATGCGGTTTTTTTTTCTACTTTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAATTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGAAAGAGCAGTTGAAAAAAGGTAAGCCTGTTTAA
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCA 	228
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTC 	6
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCT 	2
---------------------------------------------------------------------------------TAAAGCTACCAACCGGCTTCA 	3


Overlaps with: MNEST038311
Overlaps with miRBase pre-miRNAs: cel-mir-75
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 TTAAAGCTACCAACCGGCTTCA CAGTCGGTTGCAAGCTTAAATA down 4 0


Secondary structure

ATGCGGTTTTTTTTTCTACTTTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAATTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGAAAGAGCAGTTGAAAAAAGGTAAGCCTGTTTAA
------------------------------------------CAGTCGGTTGCAAGCTTAAAT 	1
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCA 	32
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCT 	2


Overlaps with: MNEST038311
Overlaps with miRBase pre-miRNAs: cel-mir-75
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297751-9445 TTAAAGCTACCAACCGGCTTCA CAGTCGGTTGCAAGCTTAAATA down 4 0


Secondary structure

ATGCGGTTTTTTTTTCTACTTTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAATTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGAAAGAGCAGTTGAAAAAAGGTAAGCCTGTTTAA
------------------------------------------CAGTCGGTTGCAAGCTTAAA 	3
------------------------------------------CAGTCGGTTGCAAGCTTAAAT 	23
------------------------------------------CAGTCGGTTGCAAGCTTAAATA 	12
-------------------------------------------------------------------------------ATTAAAGCTACCAACCGGCTTCA 	1
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCA 	11848
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTT 	7
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCT 	4
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCAA 	24
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTC 	186
---------------------------------------------------------------------------------TAAAGCTACCAACCGGCTT 	2
---------------------------------------------------------------------------------TAAAGCTACCAACCGGCTTCA 	79
---------------------------------------------------------------------------------TAAAGCTACCAACCGGCTTCAA 	2
----------------------------------------------------------------------------------AAAGCTACCAACCGGCTTCA 	24
-----------------------------------------------------------------------------------AAGCTACCAACCGGCTTCA 	15


Overlaps with: MNEST038311
Overlaps with miRBase pre-miRNAs: cel-mir-75
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297752-9446 TTAAAGCTACCAACCGGCTTCA CAGTCGGTTGCAAGCTTAAATA down 4 0


Secondary structure

ATGCGGTTTTTTTTTCTACTTTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAATTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGAAAGAGCAGTTGAAAAAAGGTAAGCCTGTTTAA
------------------------------------------CAGTCGGTTGCAAGCTTAAA 	2
------------------------------------------CAGTCGGTTGCAAGCTTAAAT 	22
------------------------------------------CAGTCGGTTGCAAGCTTAAATA 	12
-------------------------------------------------------------------------------ATTAAAGCTACCAACCGGCTTCA 	2
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCA 	17310
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTT 	24
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCAA 	36
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTC 	290
--------------------------------------------------------------------------------TTAAAGCTACCAACCGGCT 	9
---------------------------------------------------------------------------------TAAAGCTACCAACCGGCTTCA 	129
---------------------------------------------------------------------------------TAAAGCTACCAACCGGCTTCAA 	2
----------------------------------------------------------------------------------AAAGCTACCAACCGGCTTCA 	2
-----------------------------------------------------------------------------------AAGCTACCAACCGGCTTCA 	13


Overlaps with: MNEST038311
Overlaps with miRBase pre-miRNAs: cel-mir-75
HuntMi prediction: true miRNA