miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTAAATATCTGTGTGTGAAATT

selected species: Drosophila melanogaster



16 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	9
-------------------------------TTAAATATCTGTGTGTGAAAT 	1

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399106-16287 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	8
-------------------------------TTAAATATCTGTGTGTGAAATTA 	2

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466487_wt_total TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAA 	1
-------------------------------TTAAATATCTGTGTGTGAAATT 	24
-------------------------------TTAAATATCTGTGTGTGAAAT 	1
--------------------------------TAAATATCTGTGTGTGAAATT 	1
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTT 	6
--------------------------------------------------------------------TTCACGCGAAGATATTTATT 	1

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM399105-16286 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	5

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM360262-14327 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	7
-------------------------------TTAAATATCTGTGTGTGAAAT 	2
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTT 	1

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM466494_r2d2_heterozygotes_untreated TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAA 	5
-------------------------------TTAAATATCTGTGTGTGAAATT 	23
-------------------------------TTAAATATCTGTGTGTGAAAT 	3
-------------------------------TTAAATATCTGTGTGTGAA 	1

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAA 	7
-------------------------------TTAAATATCTGTGTGTGAAATT 	16
-------------------------------TTAAATATCTGTGTGTGAAAT 	5
-------------------------------TTAAATATCTGTGTGTGAA 	2
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTT 	1

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM286605-9793 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	19
-------------------------------TTAAATATCTGTGTGTGAAAT 	2
-------------------------------TTAAATATCTGTGTGTGAAATTA 	2

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM343833-15151 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	24
-------------------------------TTAAATATCTGTGTGTGAAAT 	4
-------------------------------TTAAATATCTGTGTGTGAAA 	1
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTT 	3

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM343832-15149 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	32
-------------------------------TTAAATATCTGTGTGTGAAAT 	3
-------------------------------TTAAATATCTGTGTGTGAAA 	1
-------------------------------TTAAATATCTGTGTGTGAA 	1
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTTT 	1
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTT 	2

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Drosophila melanogaster GSM399100-5263 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	6
-------------------------------TTAAATATCTGTGTGTGAAAT 	1
-------------------------------TTAAATATCTGTGTGTGAA 	1
-------------------------------------------------------------------TTTCACGCGAAGATATTTATT 	1

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Drosophila melanogaster GSM360260-14326 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	6
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTT 	1

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Drosophila melanogaster GSM322543-14323 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	9
-------------------------------TTAAATATCTGTGTGTGAAAT 	5

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Drosophila melanogaster GSM286604-9792 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	14
-------------------------------TTAAATATCTGTGTGTGAAAT 	1
-------------------------------TTAAATATCTGTGTGTGAAATTA 	3
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTT 	1

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Drosophila melanogaster GSM399110-16285 TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	16
-------------------------------TTAAATATCTGTGTGTGAAAT 	5

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Drosophila melanogaster GSM466492_dcr-2_homozygotes_untreated TTAAATATCTGTGTGTGAAATT TTTCACGCGAAGATATTTATTT up 2 0


Secondary structure

GCGGGAGAGGATTATGAAAGACAATTTGAAATTAAATATCTGTGTGTGAAATTATTTAAAAGATTAATTTCACGCGAAGATATTTATTTTTACATTTGTCCCTATAATAACCGGGGT
-------------------------------TTAAATATCTGTGTGTGAAATT 	10
-------------------------------TTAAATATCTGTGTGTGAAAT 	7
-------------------------------TTAAATATCTGTGTGTGAAA 	2
-------------------------------------------------------------------TTTCACGCGAAGATATTTATT 	1
-------------------------------------------------------------------TTTCACGCGAAGATATTTATTT 	5

Overlaps with: MNEST036605 MNEST036606
Overlaps with miRBase pre-miRNAs: dme-mir-2279
HuntMi prediction: true miRNA