miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTAAGACTTGCAGTGATGTTT

selected species: Homo sapiens

20 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Homo sapiens	GSM651905	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	191
---------------------TTAAGACTTGCAGTGATGTTT 	296
---------------------TTAAGACTTGCAGTGATGTT 	26
---------------------TTAAGACTTGCAGTGATGTTTAA 	6
---------------------TTAAGACTTGCAGTGATGT 	2
----------------------TAAGACTTGCAGTGATGTTT 	2

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Homo sapiens	GSM569185	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTT 	5
---------------------TTAAGACTTGCAGTGATGTTTA 	4

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Homo sapiens	GSM565979-9647	TTAAGACTTGCAGTGATGTTTA	AACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	20
---------------------TTAAGACTTGCAGTGATGTTT 	10
---------------------TTAAGACTTGCAGTGATGTTTAA 	4
---------------------TTAAGACTTGCAGTGATGTT 	1
---------------------TTAAGACTTGCAGTGATGT 	1
-----------------------AAGACTTGCAGTGATGTTTA 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Homo sapiens	GSM494810_Normal_2	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTAA 	6
---------------------TTAAGACTTGCAGTGATGTTTA 	25
---------------------TTAAGACTTGCAGTGATGTTT 	37
---------------------TTAAGACTTGCAGTGATGTT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Homo sapiens	GSM531974	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTAA 	14
---------------------TTAAGACTTGCAGTGATGTTTA 	243
---------------------TTAAGACTTGCAGTGATGTTT 	432
---------------------TTAAGACTTGCAGTGATGTT 	19
---------------------TTAAGACTTGCAGTGATGT 	2
----------------------TAAGACTTGCAGTGATGTTT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Homo sapiens	GSM494809_Normal_1	TTAAGACTTGCAGTGATGTTTA	AACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	47
---------------------TTAAGACTTGCAGTGATGTTT 	25
---------------------TTAAGACTTGCAGTGATGTTTAA 	4
---------------------TTAAGACTTGCAGTGATGTT 	2
---------------------TTAAGACTTGCAGTGATGT 	1
---------------------TTAAGACTTGCAGTGATGTTTAAC 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Homo sapiens	GSM565978-9532	TTAAGACTTGCAGTGATGTTTA	AACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	25
---------------------TTAAGACTTGCAGTGATGTTT 	8
---------------------TTAAGACTTGCAGTGATGTT 	3
---------------------TTAAGACTTGCAGTGATGTTTAA 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Homo sapiens	GSM569186	TTAAGACTTGCAGTGATGTTTA	AACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	5
---------------------TTAAGACTTGCAGTGATGTTT 	3
---------------------TTAAGACTTGCAGTGATGTT 	1
---------------------TTAAGACTTGCAGTGATGTTTAACT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Homo sapiens	GSM569188	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTT 	38
---------------------TTAAGACTTGCAGTGATGTTTAAC 	1
---------------------TTAAGACTTGCAGTGATGTTTA 	5
---------------------TTAAGACTTGCAGTGATGTT 	9
---------------------TTAAGACTTGCAGTGATGT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Homo sapiens	GSM569187	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTT 	18
---------------------TTAAGACTTGCAGTGATGTT 	2
---------------------TTAAGACTTGCAGTGATGTTTA 	5

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Homo sapiens	GSM651908	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTAA 	9
---------------------TTAAGACTTGCAGTGATGTTTA 	300
---------------------TTAAGACTTGCAGTGATGTTT 	439
---------------------TTAAGACTTGCAGTGATGTT 	33
---------------------TTAAGACTTGCAGTGATGT 	5
---------------------TTAAGACTTGCAGTGATGTTTAAC 	3
----------------------TAAGACTTGCAGTGATGTTTA 	10
----------------------TAAGACTTGCAGTGATGTTT 	7
----------------------TAAGACTTGCAGTGATGTT 	2
-----------------------AAGACTTGCAGTGATGTTTA 	1
-----------------------AAGACTTGCAGTGATGTTT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Homo sapiens	GSM651906	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	161
---------------------TTAAGACTTGCAGTGATGTTT 	229
---------------------TTAAGACTTGCAGTGATGTT 	31
---------------------TTAAGACTTGCAGTGATGTTTAA 	4
---------------------TTAAGACTTGCAGTGATGT 	1
----------------------TAAGACTTGCAGTGATGTTT 	4
----------------------TAAGACTTGCAGTGATGTTTA 	3
----------------------TAAGACTTGCAGTGATGTTTAA 	2
-----------------------AAGACTTGCAGTGATGTTT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Homo sapiens	GSM531982	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	227
---------------------TTAAGACTTGCAGTGATGTTT 	308
---------------------TTAAGACTTGCAGTGATGTT 	10
---------------------TTAAGACTTGCAGTGATGTTTAA 	1
----------------------TAAGACTTGCAGTGATGTTT 	2
----------------------TAAGACTTGCAGTGATGTTTAACT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Homo sapiens	GSM494811_K562	TTAAGACTTGCAGTGATGTTTA	AACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	67
---------------------TTAAGACTTGCAGTGATGTTT 	21
---------------------TTAAGACTTGCAGTGATGTTTAA 	5
---------------------TTAAGACTTGCAGTGATGTT 	3
---------------------TTAAGACTTGCAGTGATGTTTAACT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Homo sapiens	GSM531978	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	57
---------------------TTAAGACTTGCAGTGATGTTT 	150
---------------------TTAAGACTTGCAGTGATGTT 	4
---------------------TTAAGACTTGCAGTGATGT 	3
---------------------TTAAGACTTGCAGTGATGTTTAA 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Homo sapiens	GSM651907	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	104
---------------------TTAAGACTTGCAGTGATGTTT 	273
---------------------TTAAGACTTGCAGTGATGTT 	30
---------------------TTAAGACTTGCAGTGATGTTTAA 	2
---------------------TTAAGACTTGCAGTGATGT 	2
----------------------TAAGACTTGCAGTGATGTTT 	8
-----------------------AAGACTTGCAGTGATGTTTA 	1
-----------------------AAGACTTGCAGTGATGTTT 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Homo sapiens	GSM569189	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTT 	20
---------------------TTAAGACTTGCAGTGATGTTTAA 	1
---------------------TTAAGACTTGCAGTGATGTTTA 	4
---------------------TTAAGACTTGCAGTGATGTT 	7

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Homo sapiens	GSM494812_HL60	TTAAGACTTGCAGTGATGTTTA	AACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTA 	11
---------------------TTAAGACTTGCAGTGATGTTT 	9

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Homo sapiens	GSM531986-13294	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTT 	62
---------------------TTAAGACTTGCAGTGATGTTTA 	17
---------------------TTAAGACTTGCAGTGATGTT 	2
-----------------------AAGACTTGCAGTGATGTTTA 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Homo sapiens	GSM531975	TTAAGACTTGCAGTGATGTTT	ACATCACAGCAAGTCTGTGCT	up	3	0

Secondary structure

TGTGCCTTGGGCGGGCGGCTGTTAAGACTTGCAGTGATGTTTAACTCCTCTCCACGTGAACATCACAGCAAGTCTGTGCTGCTTCCCGTCCCTACGCT
---------------------TTAAGACTTGCAGTGATGTTTAA 	14
---------------------TTAAGACTTGCAGTGATGTTTA 	213
---------------------TTAAGACTTGCAGTGATGTTT 	428
---------------------TTAAGACTTGCAGTGATGTT 	13
----------------------TAAGACTTGCAGTGATGTTT 	4
----------------------TAAGACTTGCAGTGATGTTTAA 	1
-----------------------AAGACTTGCAGTGATGTTTA 	1

Overlaps with: MNEST028692 MNEST028693
Overlaps with miRBase pre-miRNAs: cfa-mir-499 hsa-mir-499a hsa-mir-499b
HuntMi prediction: true miRNA